RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NSUN5Q96P11 429 aaKnown RBP17.04■□□□□ 0.32
USP28-208ENST00000540438 GPR78Q96P69 363 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 GCNAQ96QF7 691 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 ADA2Q9NZK5 511 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 SCN10AQ9Y5Y9 1956 aa17.04■□□□□ 0.32
USP28-208ENST00000540438 HDAC3O15379 428 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 IL1BP01584 269 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 NELFEP18615 380 aaKnown RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 PSEN1P49768 467 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 AP2B1P63010 937 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 MS4A2Q01362 244 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 KLC1Q07866 573 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 POLD3Q15054 466 aaPredicted RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 INSCQ1MX18 579 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 CYP2R1Q6VVX0 501 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 ZYG11AQ6WRX3 759 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 LINC00523Q86TU6 105 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 LGI2Q8N0V4 545 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 NSMCE3Q96MG7 304 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 HBEGFQ99075 208 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 A0A1B0GTL3 188 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 GJB5O95377 273 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 FGFR3P22607 806 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 CES1P23141 567 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 RGRP47804 291 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 GEMP55040 296 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 CCL23P55773 120 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 SEMA3AQ14563 771 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 HABP4Q5JVS0 413 aaKnown RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 NET1Q7Z628 596 aaPredicted RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 ZNF598Q86UK7 904 aaKnown RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 EFHBQ8N7U6 833 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 CMTM5Q96DZ9 223 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 ZNF184Q99676 751 aaPredicted RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 SEMA6AQ9H2E6 1030 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 SARS2Q9NP81 518 aaKnown RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 UTP6Q9NYH9 597 aaKnown RBP17.03■□□□□ 0.32
USP28-208ENST00000540438 NCKIPSDQ9NZQ3 722 aa17.03■□□□□ 0.32
USP28-208ENST00000540438 CAPN8A6NHC0 703 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 ZNF623O75123 536 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 MAGEA12P43365 314 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 SERPINH1P50454 418 aaKnown RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 CDC16Q13042 620 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 DEFB128Q7Z7B8 93 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 MYLK4Q86YV6 388 aaPredicted RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 DSELQ8IZU8 1212 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 NUDT8Q8WV74 236 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 DNAJC28Q9NX36 388 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 PCDHGC4Q9Y5F7 938 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 TDRD15B5MCY1 1934 aaKnown RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 PEX11BO96011 259 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 SPATA31D3P0C874 917 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 ADRA1AP35348 466 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 SGSHP51688 502 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 YBX1P67809 324 aaKnown RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 GK3PQ14409 553 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 SPATA31D4Q6ZUB0 917 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 MAB21L3Q8N8X9 362 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 FAM110BQ8TC76 370 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 STYXQ8WUJ0 223 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 TUBGCP5Q96RT8 1024 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 VAT1Q99536 393 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 COPS7BQ9H9Q2 264 aaPredicted RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 S100A14Q9HCY8 104 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 GEMIN8Q9NWZ8 242 aaKnown RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 Q9Y3F1 56 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 COPG1Q9Y678 874 aaKnown RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 TRPM7Q96QT4 1865 aa17.02■□□□□ 0.32
USP28-208ENST00000540438 NYNRINQ9P2P1 1898 aaKnown RBP17.02■□□□□ 0.32
USP28-208ENST00000540438 MAGEB16A2A368 324 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 ERI2A8K979 691 aaKnown RBP17.02■□□□□ 0.31
USP28-208ENST00000540438 MMP2P08253 660 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 ARL1P40616 181 aaPredicted RBP17.02■□□□□ 0.31
USP28-208ENST00000540438 CCNHP51946 323 aaPredicted RBP17.02■□□□□ 0.31
USP28-208ENST00000540438 TCTN1Q2MV58 587 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 TRMT5Q32P41 509 aaKnown RBP17.02■□□□□ 0.31
USP28-208ENST00000540438 EP400NLQ6ZTU2 488 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 CD99L2Q8TCZ2 262 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 GDPD5Q8WTR4 605 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 WBP2Q969T9 261 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 RMDN1Q96DB5 314 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 HAPLN3Q96S86 360 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 ZBED2Q9BTP6 218 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 DRC3Q9H069 523 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 TRPC7Q9HCX4 862 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 ARHGAP26Q9UNA1 814 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 BTRCQ9Y297 605 aa17.02■□□□□ 0.31
USP28-208ENST00000540438 CCDC189A1A4V9 331 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 LMNAP02545 664 aaKnown RBP17.01■□□□□ 0.31
USP28-208ENST00000540438 CA8P35219 290 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 AIF1P55008 147 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 CSE1LP55060 971 aaKnown RBP17.01■□□□□ 0.31
USP28-208ENST00000540438 MANEALQ5VSG8 457 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 DENND1CQ8IV53 801 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 COLGALT2Q8IYK4 626 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 RAB3IL1Q8TBN0 382 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 APBB2Q92870 758 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 SERPINB11Q96P15 392 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 ZYG11BQ9C0D3 744 aa17.01■□□□□ 0.31
USP28-208ENST00000540438 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms