RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 TMEM30AQ9NV96 361 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 AURKCQ9UQB9 309 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 H3BRB1 525 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 PIRO00625 290 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 HNRNPCP07910 306 aaKnown RBP eCLIP20.45■□□□□ 0.86
TMEM260-203ENST00000539559 TFPTP0C1Z6 253 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 CDK9P50750 372 aaKnown RBP20.45■□□□□ 0.86
TMEM260-203ENST00000539559 GRIK4Q16099 956 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 SLC27A1Q6PCB7 646 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 GPR142Q7Z601 462 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 KIFC1Q9BW19 673 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 TUT1Q9H6E5 874 aaKnown RBP20.45■□□□□ 0.86
TMEM260-203ENST00000539559 PLEKHA5Q9HAU0 1116 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 CEP350Q5VT06 3117 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 RBM47A0AV96 593 aaKnown RBP20.45■□□□□ 0.86
TMEM260-203ENST00000539559 MAGEB16A2A368 324 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 TRPC5OSA6NMA1 111 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 ATP6V1B2P21281 511 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 SEMA3BQ13214 749 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 SEPT6Q14141 434 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 ANKDD1AQ495B1 522 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 ERI1Q8IV48 349 aaKnown RBP20.45■□□□□ 0.86
TMEM260-203ENST00000539559 ZNF786Q8N393 782 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 FICDQ9BVA6 458 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 EGFL7Q9UHF1 273 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 CDC14AQ9UNH5 594 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 TIMM13Q9Y5L4 95 aaPredicted RBP20.45■□□□□ 0.86
TMEM260-203ENST00000539559 PTGDR2Q9Y5Y4 395 aa20.45■□□□□ 0.86
TMEM260-203ENST00000539559 PMPCBO75439 489 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 GPC4O75487 556 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 LRIG2O94898 1065 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 HSPA1AP0DMV8 641 aaKnown RBP20.44■□□□□ 0.86
TMEM260-203ENST00000539559 HSPA1BP0DMV9 641 aaKnown RBP20.44■□□□□ 0.86
TMEM260-203ENST00000539559 PRKCQQ04759 706 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 WSCD1Q658N2 575 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 PDZD4Q76G19 769 aaPredicted RBP20.44■□□□□ 0.86
TMEM260-203ENST00000539559 PPTC7Q8NI37 304 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 SPAG4Q9NPE6 437 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 THEGQ9P2T0 379 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 OR12D3Q9UGF7 316 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 CNOT11Q9UKZ1 510 aaKnown RBP20.44■□□□□ 0.86
TMEM260-203ENST00000539559 PADI4Q9UM07 663 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 FAF1Q9UNN5 650 aaPredicted RBP20.44■□□□□ 0.86
TMEM260-203ENST00000539559 HUS1O60921 280 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 LRPAP1P30533 357 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 DCAF4L1Q3SXM0 396 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 NAPEPLDQ6IQ20 393 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 RWDD4Q6NW29 188 aaKnown RBP20.44■□□□□ 0.86
TMEM260-203ENST00000539559 PKN3Q6P5Z2 889 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 CUZD1Q86UP6 607 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 HDAC11Q96DB2 347 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 SLC2A13Q96QE2 648 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 RHOBTB2Q9BYZ6 727 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 DNAI2Q9GZS0 605 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 SIK2Q9H0K1 926 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 PNPLA3Q9NST1 481 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 RRN3Q9NYV6 651 aa20.44■□□□□ 0.86
TMEM260-203ENST00000539559 CCDC166P0CW27 439 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 SLC7A1P30825 629 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 HK2P52789 917 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 GALNT2Q10471 571 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 STX5Q13190 355 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 FAM110CQ1W6H9 321 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 EMID1Q96A84 441 aaPredicted RBP20.43■□□□□ 0.86
TMEM260-203ENST00000539559 OLFM1Q99784 485 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 PTPN18Q99952 460 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 TKTL2Q9H0I9 626 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 UTP6Q9NYH9 597 aaKnown RBP20.43■□□□□ 0.86
TMEM260-203ENST00000539559 PLXNB2O15031 1838 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 TCRBV3S1A0A5B6 114 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 FRG1Q14331 258 aaKnown RBP20.43■□□□□ 0.86
TMEM260-203ENST00000539559 GRB14Q14449 540 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 C16orf72Q14CZ0 275 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 NHSL2Q5HYW2 709 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 LDB1Q86U70 411 aaPredicted RBP20.43■□□□□ 0.86
TMEM260-203ENST00000539559 CBR4Q8N4T8 237 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 RANBP9Q96S59 729 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 CD300AQ9UGN4 299 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 FBXW11Q9UKB1 542 aa20.43■□□□□ 0.86
TMEM260-203ENST00000539559 UBQLN1Q9UMX0 589 aaKnown RBP20.43■□□□□ 0.86
TMEM260-203ENST00000539559 ERI2A8K979 691 aaKnown RBP20.42■□□□□ 0.86
TMEM260-203ENST00000539559 CCL22O00626 93 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 SNAI1O95863 264 aaPredicted RBP20.42■□□□□ 0.86
TMEM260-203ENST00000539559 SNRPB2P08579 225 aaKnown RBP20.42■□□□□ 0.86
TMEM260-203ENST00000539559 ARCN1P48444 511 aaKnown RBP20.42■□□□□ 0.86
TMEM260-203ENST00000539559 PRKAA2P54646 552 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 PRPSAP1Q14558 356 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 ALKAL1Q6UXT8 129 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 SH3RF2Q8TEC5 729 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 C3orf30Q96M34 536 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 HNRNPABQ99729 332 aaKnown RBP20.42■□□□□ 0.86
TMEM260-203ENST00000539559 TBL1YQ9BQ87 522 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 KATNBL1Q9H079 304 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 IGSF5Q9NSI5 407 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 CROTQ9UKG9 612 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 MYLKQ15746 1914 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 A8MT66 165 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 UBFD1O14562 309 aaKnown RBP20.42■□□□□ 0.86
TMEM260-203ENST00000539559 NPHS1O60500 1241 aa20.42■□□□□ 0.86
TMEM260-203ENST00000539559 ATP5F1P24539 256 aaPredicted RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms