RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	CPNE5	Q9HCH3	593 aa		11.71	□□□□□ -0.53
CTNND1-238	ENST00000534647	IFNK	Q9P0W0	207 aa		11.71	□□□□□ -0.53
CTNND1-238	ENST00000534647	VTI1B	Q9UEU0	232 aa		11.71	□□□□□ -0.53
CTNND1-238	ENST00000534647	OR12D3	Q9UGF7	316 aa		11.71	□□□□□ -0.53
CTNND1-238	ENST00000534647	SATB2	Q9UPW6	733 aa		11.71	□□□□□ -0.53
CTNND1-238	ENST00000534647	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	11.71	□□□□□ -0.53
CTNND1-238	ENST00000534647	FCF1	Q9Y324	198 aa	Known RBP	11.71	□□□□□ -0.53
CTNND1-238	ENST00000534647	TRPM6	Q9BX84	2022 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647		J3QKU1	62 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647		K7ENP7	123 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	GCAT	O75600	419 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	PNMA6A	P0CW24	399 aa	Predicted RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	RHOQ	P17081	205 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	MSN	P26038	577 aa	Known RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	MTIF2	P46199	727 aa	Known RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	UBASH3A	P57075	661 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	SNRPD1	P62314	119 aa	Known RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	POLD3	Q15054	466 aa	Predicted RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	DEFB133	Q30KQ1	61 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	FILIP1L	Q4L180	1135 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	VWA3B	Q502W6	1294 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	MIIP	Q5JXC2	388 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	ARHGAP40	Q5TG30	622 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	KLHDC7A	Q5VTJ3	777 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	INO80C	Q6PI98	192 aa	Predicted RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	LVRN	Q6Q4G3	990 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	FAM131B	Q86XD5	332 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	FAM114A1	Q8IWE2	563 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	SDR16C5	Q8N3Y7	309 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	OR2AP1	Q8NGE2	309 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	WDR36	Q8NI36	951 aa	Known RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	LMX1A	Q8TE12	382 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	ATXN7L3B	Q96GX2	97 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	NAF1	Q96HR8	494 aa	Known RBP	11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	ZDHHC6	Q9H6R6	413 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	TMEM248	Q9NWD8	314 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	HPCAL4	Q9UM19	191 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	MFHAS1	Q9Y4C4	1052 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	PCDHGA11	Q9Y5H2	935 aa		11.7	□□□□□ -0.54
CTNND1-238	ENST00000534647	COL6A6	A6NMZ7	2263 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	TMEM110-MUSTN1	A8MSY1	372 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647		B8ZZF3	427 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	NTN3	O00634	580 aa	Predicted RBP	11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	NEMP1	O14524	444 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	C6	P13671	934 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	ACVRL1	P37023	503 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	PEX5	P50542	639 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	SUOX	P51687	545 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	THOP1	P52888	689 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	NOMO3	P69849	1222 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	ARL13B	Q3SXY8	428 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	C3orf38	Q5JPI3	329 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	PERM1	Q5SV97	790 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	ZNF677	Q86XU0	584 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	SLC35F3	Q8IY50	421 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	ARL14	Q8N4G2	192 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	ARMC2	Q8NEN0	867 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	HCAR2	Q8TDS4	363 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	CASKIN2	Q8WXE0	1202 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	CENPI	Q92674	756 aa	Predicted RBP	11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	C1QTNF7	Q9BXJ2	289 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	STK33	Q9BYT3	514 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	TM6SF2	Q9BZW4	377 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	XPO4	Q9C0E2	1151 aa	Known RBP	11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	NDFIP2	Q9NV92	336 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	DKK3	Q9UBP4	350 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	APOBEC3B	Q9UH17	382 aa	Known RBP	11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	ACTL7A	Q9Y615	435 aa		11.69	□□□□□ -0.54
CTNND1-238	ENST00000534647	DOCK4	Q8N1I0	1966 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	TENM4	Q6N022	2769 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	COL27A1	Q8IZC6	1860 aa	Predicted RBP	11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	CCDC187	A0A096LP49	1063 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	GOLGA8S	H3BPF8	625 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	KRIT1	O00522	736 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	YY2	O15391	372 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	KDELR3	O43731	214 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	TPM2	P07951	284 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	ANXA6	P08133	673 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	ITGA2B	P08514	1039 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	UCHL3	P15374	230 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	MMP8	P22894	467 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	PTPN9	P43378	593 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	BLK	P51451	505 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	ADK	P55263	362 aa	Known RBP	11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	RAPGEF1	Q13905	1077 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	AGER	Q15109	404 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	CCDC14	Q49A88	953 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	INO80D	Q53TQ3	878 aa	Predicted RBP	11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	PRRT3	Q5FWE3	981 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	ESRP1	Q6NXG1	681 aa	Known RBP	11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	XKR5	Q6UX68	686 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	GDPD4	Q6W3E5	623 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	MACC1	Q6ZN28	852 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	STRADA	Q7RTN6	431 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	TTC7B	Q86TV6	843 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	PHACTR4	Q8IZ21	702 aa		11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	FSTL5	Q8N475	847 aa	Predicted RBP	11.68	□□□□□ -0.54
CTNND1-238	ENST00000534647	CPA5	Q8WXQ8	436 aa		11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms