RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 IL21RQ9HBE5 538 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 ATP8A1Q9Y2Q0 1164 aa13.1□□□□□ -0.31
VPS28-216ENST00000533806 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.09□□□□□ -0.31
VPS28-216ENST00000533806 DCDC2BA2VCK2 349 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 IGLON5A6NGN9 336 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 GOLGA6L6A8MZA4 724 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 RIOK3O14730 519 aaKnown RBP13.09□□□□□ -0.31
VPS28-216ENST00000533806 RAD51BO15315 384 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 ARHGAP6O43182 974 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 FZD6O60353 706 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 SOCS5O75159 536 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 ZNF883P0CG24 379 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 CCNB1P14635 433 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 PRLRP16471 622 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 SERPINA4P29622 427 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 NR2C2P49116 596 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 NXPH1P58417 271 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 MAXP61244 160 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 IFI35P80217 286 aaPredicted RBP13.09□□□□□ -0.31
VPS28-216ENST00000533806 CCZ1BP86790 482 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 CCZ1P86791 482 aaPredicted RBP13.09□□□□□ -0.31
VPS28-216ENST00000533806 BCL2L1Q07817 233 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 OVGP1Q12889 678 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 SLC14A1Q13336 389 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 PPP2R5EQ16537 467 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 TFDP3Q5H9I0 405 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 LRRC73Q5JTD7 316 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 ABI3BPQ7Z7G0 1075 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 KIAA1328Q86T90 577 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 SPATS2Q86XZ4 545 aaKnown RBP13.09□□□□□ -0.31
VPS28-216ENST00000533806 RFX6Q8HWS3 928 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 CNTD1Q8N815 330 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 CCDC112Q8NEF3 446 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 ARRDC2Q8TBH0 407 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 NSMCE1Q8WV22 266 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 ALG3Q92685 438 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 KLK6Q92876 244 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 CENPTQ96BT3 561 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 BMFQ96LC9 184 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 IL12RB2Q99665 862 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 HERPUD2Q9BSE4 406 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 MAK16Q9BXY0 300 aaKnown RBP13.09□□□□□ -0.31
VPS28-216ENST00000533806 GAREM1Q9H706 876 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 PCDH12Q9NPG4 1184 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 GPR27Q9NS67 375 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 SAE1Q9UBE0 346 aaPredicted RBP13.09□□□□□ -0.31
VPS28-216ENST00000533806 CA5BQ9Y2D0 317 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 EFR3BQ9Y2G0 817 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 PCDHGC4Q9Y5F7 938 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 HEY1Q9Y5J3 304 aa13.09□□□□□ -0.31
VPS28-216ENST00000533806 CCDC66A2RUB6 948 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 TLR4O00206 839 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 SLC31A1O15431 190 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 CST8O60676 142 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 PAK4O96013 591 aaPredicted RBP13.08□□□□□ -0.32
VPS28-216ENST00000533806 HNRNPA2B1P22626 353 aaKnown RBP13.08□□□□□ -0.32
VPS28-216ENST00000533806 PTPN7P35236 360 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 MMP12P39900 470 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 COPS2P61201 443 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 TRAF2Q12933 501 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 ZBTB17Q13105 803 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 TFDP2Q14188 446 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 AGERQ15109 404 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 PDK1Q15118 436 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 SHBQ15464 509 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 GCNT7Q6ZNI0 430 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 ZNF662Q6ZS27 426 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 BBS12Q6ZW61 710 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 CCDC13Q8IYE1 715 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 CBARPQ8N350 705 aaPredicted RBP13.08□□□□□ -0.32
VPS28-216ENST00000533806 BBS5Q8N3I7 341 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 TXLNBQ8N3L3 684 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 RNF10Q8N5U6 811 aaKnown RBP13.08□□□□□ -0.32
VPS28-216ENST00000533806 CCNYQ8ND76 341 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 RBM41Q96IZ5 413 aaKnown RBP13.08□□□□□ -0.32
VPS28-216ENST00000533806 BRD8Q9H0E9 1235 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 NT5MQ9NPB1 228 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 SCUBE2Q9NQ36 999 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 AASDHPPTQ9NRN7 309 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 RBM22Q9NW64 420 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS28-216ENST00000533806 FNDC3AQ9Y2H6 1198 aaKnown RBP13.08□□□□□ -0.32
VPS28-216ENST00000533806 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS28-216ENST00000533806 PPIL1Q9Y3C6 166 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 HS3ST3A1Q9Y663 406 aa13.08□□□□□ -0.32
VPS28-216ENST00000533806 CNOT1A5YKK6 2376 aaKnown RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 MACROD2A1Z1Q3 448 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 CFAP69A5D8W1 941 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 GOLGA6L3A6NEY3 463 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 H0Y8X5 98 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 KCNK1O00180 336 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 KCNK3O14649 394 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 MMP20O60882 483 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 OPHN1O60890 802 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 CER1O95813 267 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 JCHAINP01591 159 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 HLA-DQB2P05538 268 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 MMP2P08253 660 aa13.07□□□□□ -0.32
VPS28-216ENST00000533806 PECAM1P16284 738 aaPredicted RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 CSRP1P21291 193 aaKnown RBP13.07□□□□□ -0.32
VPS28-216ENST00000533806 TGM2P21980 687 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms