RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 IGSF10Q6WRI0 2623 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 DOCK9Q9BZ29 2069 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 TCRBV5S1A1TA0A578 114 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 TMEM110-MUSTN1A8MSY1 372 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 EIF3CLB5ME19 914 aaKnown RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 LMO7DNF2Z398 122 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 INSIG1O15503 277 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 PALMO75781 387 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 RBMS1P29558 406 aaKnown RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 LSSP48449 732 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 ELOCQ15369 112 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 ASIC2Q16515 512 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 TMEM52BQ4KMG9 183 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 PPP1R15BQ5SWA1 713 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 TPRG1LQ5T0D9 272 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 RBM44Q6ZP01 1051 aaKnown RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 RD3Q7Z3Z2 195 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 HID1Q8IV36 788 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 NAT6Q93015 286 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 GRAMD1AQ96CP6 724 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 NAF1Q96HR8 494 aaKnown RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 CELF6Q96J87 481 aaKnown RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 ZNF641Q96N77 438 aaPredicted RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 EIF3CQ99613 913 aaKnown RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 ATP13A3Q9H7F0 1226 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 POLR1BQ9H9Y6 1135 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 MBNL1Q9NR56 388 aaKnown RBP14.88□□□□□ -0.03
VPS28-215ENST00000531924 GPATCH2LQ9NWQ4 482 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 GULP1Q9UBP9 304 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 LHX3Q9UBR4 397 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 PCSK1NQ9UHG2 260 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 MYO6Q9UM54 1294 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 CELSR3Q9NYQ7 3312 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 TRPM6Q9BX84 2022 aa14.88□□□□□ -0.03
VPS28-215ENST00000531924 LY6G6EA0A0G2JKS1 128 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 J3KR12 359 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 PRPSAP2O60256 369 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 PRAMEF11O60813 436 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 GCATO75600 419 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 ALPIP09923 528 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 ATP1A3P13637 1013 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 SERPINA4P29622 427 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 PEX5P50542 639 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 PAPOLAP51003 745 aaKnown RBP14.87□□□□□ -0.03
VPS28-215ENST00000531924 TYRO3Q06418 890 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 MAMLD1Q13495 774 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 IRF4Q15306 451 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 UGP2Q16851 508 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 ISXQ2M1V0 245 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 PPP6R3Q5H9R7 873 aaPredicted RBP14.87□□□□□ -0.03
VPS28-215ENST00000531924 C6orf132Q5T0Z8 1188 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 ERMARDQ5T6L9 678 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 BRAT1Q6PJG6 821 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 CRTC1Q6UUV9 634 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 GPR155Q7Z3F1 870 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 FSTL5Q8N475 847 aaPredicted RBP14.87□□□□□ -0.03
VPS28-215ENST00000531924 TP53I13Q8NBR0 393 aaPredicted RBP14.87□□□□□ -0.03
VPS28-215ENST00000531924 TBATAQ96M53 351 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 TUBGCP5Q96RT8 1024 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 LRRC61Q9BV99 259 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 CINPQ9BW66 212 aaPredicted RBP14.87□□□□□ -0.03
VPS28-215ENST00000531924 TCEAL2Q9H3H9 227 aaPredicted RBP14.87□□□□□ -0.03
VPS28-215ENST00000531924 PRORYQ9H606 182 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 LRRC19Q9H756 370 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 SP110Q9HB58 689 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 PCDH12Q9NPG4 1184 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 THSD1Q9NS62 852 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 TAS2R14Q9NYV8 317 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 COQ6Q9Y2Z9 468 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 RAI2Q9Y5P3 530 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 U3KQA8 63 aa14.87□□□□□ -0.03
VPS28-215ENST00000531924 ARID1BQ8NFD5 2236 aaPredicted RBP14.86□□□□□ -0.03
VPS28-215ENST00000531924 EME2A4GXA9 379 aaPredicted RBP14.86□□□□□ -0.03
VPS28-215ENST00000531924 SMTNL1A8MU46 457 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 DFFAO00273 331 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 YY2O15391 372 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 RASGRP1O95267 797 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 C6P13671 934 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 TSHRP16473 764 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 TGM2P21980 687 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 LIG3P49916 1009 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 ERVPABLB-1P60509 514 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 CXADRP78310 365 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 OGDHQ02218 1023 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 NCAPHQ15003 741 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 TCEA2Q15560 299 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 C3orf38Q5JPI3 329 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 FOXR1Q6PIV2 292 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 ENPP7Q6UWV6 458 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 RFX8Q6ZV50 586 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 IRF2BP2Q7Z5L9 587 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 SRLQ86TD4 932 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 CAMK1DQ8IU85 385 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 SPACA3Q8IXA5 215 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 WDR48Q8TAF3 677 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 BBC3Q96PG8 261 aaPredicted RBP14.86□□□□□ -0.03
VPS28-215ENST00000531924 BOCQ9BWV1 1114 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 SLC39A8Q9C0K1 460 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 PADI4Q9UM07 663 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 ATP8A1Q9Y2Q0 1164 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms