RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RYBPQ8N488 228 aaPredicted RBP21.2■□□□□ 0.98
VPS28-208ENST00000527797 PPM1NQ8N819 430 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 SLC44A1Q8WWI5 657 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 CIPCQ9C0C6 399 aa21.2■□□□□ 0.98
VPS28-208ENST00000527797 PRLP01236 227 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 INHBAP08476 426 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 MAGOHP61326 146 aaKnown RBP21.19■□□□□ 0.98
VPS28-208ENST00000527797 MGAT5Q09328 741 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 TMED2Q15363 201 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 SLC26A11Q86WA9 606 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 LPCAT1Q8NF37 534 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 PDCD6IPQ8WUM4 868 aaKnown RBP21.19■□□□□ 0.98
VPS28-208ENST00000527797 DCAKDQ8WVC6 231 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 CERS2Q96G23 380 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 LRCH3Q96II8 777 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 SMYD2Q9NRG4 433 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 SLC8A2Q9UPR5 921 aa21.19■□□□□ 0.98
VPS28-208ENST00000527797 CXorf49A8MYA2 514 aaPredicted RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 H3BQ06 376 aaPredicted RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 SRPRAP08240 638 aaKnown RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 DLDP09622 509 aaKnown RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 BCL2L1Q07817 233 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 NAB1Q13506 487 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 MYLK3Q32MK0 819 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 CARD16Q5EG05 197 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 NLRP9Q7RTR0 991 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 UNC5BQ8IZJ1 945 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 CYP4X1Q8N118 509 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 OR6K2Q8NGY2 324 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 TTC8Q8TAM2 541 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 CYB5D2Q8WUJ1 264 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 MRGPRX3Q96LB0 322 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 ZNF778Q96MU6 729 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 RPP25Q9BUL9 199 aaKnown RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 GTSE1Q9NYZ3 720 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 HECAQ9UBI9 543 aaPredicted RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 CCDC78A2IDD5 438 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 TIMM44O43615 452 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 PDHA1P08559 390 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 PAMP19021 973 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 VASPP50552 380 aaPredicted RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 RAD51Q06609 339 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 ARMC12Q5T9G4 340 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 RASSF3Q86WH2 238 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 FAM76AQ8TAV0 307 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 BLOC1S5Q8TDH9 187 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 SORCS1Q8WY21 1168 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 ATP13A3Q9H7F0 1226 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 C20orf96Q9NUD7 363 aaPredicted RBP21.18■□□□□ 0.98
VPS28-208ENST00000527797 ELOVL2Q9NXB9 296 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 NUMBLQ9Y6R0 609 aa21.18■□□□□ 0.98
VPS28-208ENST00000527797 MYOFQ9NZM1 2061 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 BNIP3LO60238 219 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 FZD6O60353 706 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 PAPSS2O95340 614 aaPredicted RBP21.17■□□□□ 0.98
VPS28-208ENST00000527797 POP4O95707 220 aaKnown RBP21.17■□□□□ 0.98
VPS28-208ENST00000527797 ERVK-10P10266 1014 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 GJA4P35212 333 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 RECQLP46063 649 aaPredicted RBP21.17■□□□□ 0.98
VPS28-208ENST00000527797 KDSRQ06136 332 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 ITPRIPL2Q3MIP1 535 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 TSTD2Q5T7W7 516 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 PDPK2PQ6A1A2 396 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 CAMK1DQ8IU85 385 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 PLPP6Q8IY26 295 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 BRSK1Q8TDC3 778 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 MYLIPQ8WY64 445 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 MYO19Q96H55 970 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 TUBGCP5Q96RT8 1024 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 TREX1Q9NSU2 369 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 ZFATQ9P243 1243 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 ZNF180Q9UJW8 692 aa21.17■□□□□ 0.98
VPS28-208ENST00000527797 MROH6A6NGR9 719 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 ANKRD66B4E2M5 251 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 ANHXE9PGG2 379 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 SOCS5O75159 536 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 SP100P23497 879 aaPredicted RBP21.16■□□□□ 0.98
VPS28-208ENST00000527797 SERPINA4P29622 427 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 EPHB1P54762 984 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 ST8SIA6P61647 398 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 HTR4Q13639 388 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 EIF4HQ15056 248 aaKnown RBP21.16■□□□□ 0.98
VPS28-208ENST00000527797 LGSNQ5TDP6 509 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 ESRP1Q6NXG1 681 aaKnown RBP21.16■□□□□ 0.98
VPS28-208ENST00000527797 MARK2Q7KZI7 788 aaKnown RBP21.16■□□□□ 0.98
VPS28-208ENST00000527797 KCNMB4Q86W47 210 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 CPEB1Q9BZB8 566 aaKnown RBP21.16■□□□□ 0.98
VPS28-208ENST00000527797 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.16■□□□□ 0.98
VPS28-208ENST00000527797 PLA2G4CQ9UP65 541 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 PCDHB9Q9Y5E1 797 aa21.16■□□□□ 0.98
VPS28-208ENST00000527797 IQANK1A0A1B0GTG1 560 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 GRXCR2A6NFK2 248 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 TRAFD1O14545 582 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 HTRA2O43464 458 aaPredicted RBP21.15■□□□□ 0.98
VPS28-208ENST00000527797 PGLSO95336 258 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 PIGNO95427 931 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 CRTAMO95727 393 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 KRT15P19012 456 aa21.15■□□□□ 0.98
VPS28-208ENST00000527797 NR1D1P20393 614 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms