RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 RAB28P51157 221 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 BMXP51813 675 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LUMP51884 338 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHN2P52757 468 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL12P52815 198 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAPZA1P52907 286 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP5CP53041 499 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARFIP1P53367 373 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PGGT1BP53609 377 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATXN3P54252 364 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PNLIPRP2P54317 469 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAS1P54826 345 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDH8P55286 799 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FOXG1P55316 489 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNU13P55769 128 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 UCP3P55916 312 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 EEFSECP57772 596 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANTXR2P58335 489 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIAA1024LP59773 190 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP10-11P60412 298 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 POLR2FP61218 127 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 STX1BP61266 288 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 UFM1P61960 85 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBB4BP68371 445 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM6P78332 1123 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ASIC1P78348 528 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OLR1P78380 273 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNJ10P78508 379 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSD11B2P80365 405 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SIM1P81133 766 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPS5P82675 430 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC25A3Q00325 362 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT17Q04695 432 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 EGR4Q05215 589 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNASELQ05823 741 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPATQ06203 517 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD69Q07108 199 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NIPAL4Q0D2K0 466 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TEFQ10587 303 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CETN1Q12798 172 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TCF15Q12870 199 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SF3A3Q12874 501 aaKnown RBP eCLIP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM115Q12893 351 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPRL3Q12980 569 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRIK2Q13002 908 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPS1Q13098 491 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTM1Q13496 603 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAMK2DQ13557 499 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TP53BP2Q13625 1128 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DYRK1AQ13627 763 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ITGA7Q13683 1181 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALCAMQ13740 583 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 THOC5Q13769 683 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTK6Q13882 451 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNTB1Q13884 538 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAPSQ13938 189 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CBFBQ13951 182 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RCN2Q14257 317 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAMTQ14353 236 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CSHL1Q14406 222 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NFE2L1Q14494 772 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF268Q14587 947 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF273Q14593 569 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IRF3Q14653 427 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRM4Q14833 912 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NAA25Q14CX7 972 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCLAFQ15004 111 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IQCB1Q15051 598 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPS6KA1Q15418 735 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MED22Q15528 200 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OASLQ15646 514 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZKSCAN8Q15776 578 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBCCQ15814 346 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HLFQ16534 295 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MEP1BQ16820 701 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PFKFB3Q16875 520 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GEN1Q17RS7 908 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HYAL4Q2M3T9 481 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYLK3Q32MK0 819 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF750Q32MQ0 723 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TWISTNBQ3B726 338 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP27-1Q3LI81 207 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPCR1Q3MIW9 517 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MGAT5BQ3V5L5 792 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RABL6Q3YEC7 729 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF260Q3ZCT1 412 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GALNTL6Q49A17 601 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC9C1Q4G0N8 1177 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD20A4Q4UJ75 823 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC24Q50LG9 513 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDCD4Q53EL6 469 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC23Q53EV4 343 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLA1AQ53H76 456 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD20A8PQ5CZ79 823 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF805Q5CZA5 627 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF628Q5EBL2 1059 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZRANB3Q5FWF4 1079 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF766Q5HY98 468 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NHSL2Q5HYW2 709 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRBOX4Q5JUW0 171 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms