RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 WRAP53Q9BUR4 548 aaKnown RBP10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 CINPQ9BW66 212 aaPredicted RBP10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 C1QTNF7Q9BXJ2 289 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 SUV39H2Q9H5I1 410 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 SP110Q9HB58 689 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 PCDH12Q9NPG4 1184 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 IFNKQ9P0W0 207 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 KLF15Q9UIH9 416 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 NENFQ9UMX5 172 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 U3KQA8 63 aa10.56□□□□□ -0.72
HMGXB3-205ENST00000514469 A0A087X0T9 212 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 TRABD2BA6NFA1 517 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 NEMP2A6NFY4 417 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 H3BRJ5 948 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 K7ESM1 405 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 TOR1BO14657 336 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 MUSKO15146 869 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 AQP9O43315 295 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 PALMO75781 387 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 PEX11BO96011 259 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 FAM228BP0C875 321 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 RARAP10276 462 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 C6P13671 934 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 XPAP23025 273 aaPredicted RBP10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 SERPINA4P29622 427 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ARL4AP40617 200 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 YPEL5P62699 121 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 DAB2P98082 770 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 INSM1Q01101 510 aaPredicted RBP10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 NSUN2Q08J23 767 aaKnown RBP eCLIP10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 PTK2BQ14289 1009 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 AGERQ15109 404 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 IRF4Q15306 451 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 BOLA3Q53S33 107 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 TMCO4Q5TGY1 634 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ERAP2Q6P179 960 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 MACC1Q6ZN28 852 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 POLNQ7Z5Q5 900 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 SRLQ86TD4 932 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 CAMK1DQ8IU85 385 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 TP53INP2Q8IXH6 220 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 CACTIN-AS1Q8N1I8 211 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 TEKT4Q8WW24 435 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 HSPH1Q92598 858 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ECHDC3Q96DC8 303 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 NXPE2Q96DL1 559 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 APOLD1Q96LR9 279 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 TBATAQ96M53 351 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ZNF599Q96NL3 588 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 CSPG4P5Q96PW8 444 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 PSKH2Q96QS6 385 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 DUSP23Q9BVJ7 150 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 NUP85Q9BW27 656 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ATP13A3Q9H7F0 1226 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 USP29Q9HBJ7 922 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 MBNL1Q9NR56 388 aaKnown RBP10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ETNK2Q9NVF9 386 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 IPO11Q9UI26 975 aaKnown RBP10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ANAPC7Q9UJX3 599 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 PNMA8BQ9ULN7 279 aaPredicted RBP10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ATP8A1Q9Y2Q0 1164 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 LUC7L2Q9Y383 392 aaKnown RBP10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 GPSM3Q9Y4H4 160 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 CSNK1G3Q9Y6M4 447 aa10.55□□□□□ -0.72
HMGXB3-205ENST00000514469 ANKRD11Q6UB99 2663 aaPredicted RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 CELSR3Q9NYQ7 3312 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 TRAFD1O14545 582 aaPredicted RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 RIOK3O14730 519 aaKnown RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 NEBLO76041 1014 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 GP1BAP07359 652 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 JUPP14923 745 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 JUNDP17535 347 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 HNRNPH3P31942 346 aaKnown RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 CASP14P31944 242 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 THOP1P52888 689 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 AP1S1P61966 158 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 CYP4F3Q08477 520 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 TARDBPQ13148 414 aaKnown RBP eCLIP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 LBRQ14739 615 aaKnown RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 LRRC14Q15048 493 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 CFAP58Q5T655 872 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 TXNRD3NBQ6F5E7 133 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 ZCCHC8Q6NZY4 707 aaKnown RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 ALKBH5Q6P6C2 394 aaKnown RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 TMCO3Q6UWJ1 677 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 PHACTR4Q8IZ21 702 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 RBFAQ8N0V3 343 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 DCBLD1Q8N8Z6 715 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 FAM71BQ8TC56 605 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 CPLX3Q8WVH0 158 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 BTN2A2Q8WVV5 523 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 SPOCK2Q92563 424 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 BTBD6Q96KE9 485 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 NSMCE3Q96MG7 304 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 PCDH18Q9HCL0 1135 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 SEPT3Q9UH03 358 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 APOBEC3BQ9UH17 382 aaKnown RBP10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 IP6K2Q9UHH9 426 aa10.54□□□□□ -0.72
HMGXB3-205ENST00000514469 RAXQ9Y2V3 346 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms