RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 FAM162AQ96A26 154 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 PEBP4Q96S96 227 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 TRIM45Q9H8W5 580 aaPredicted RBP13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 FAM32AQ9Y421 112 aaKnown RBP13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 DYRK1BQ9Y463 629 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 TNRC6CQ9HCJ0 1690 aaKnown RBP13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 LIMK2P53671 638 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 WASHC5Q12768 1159 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 KIAA0408Q6ZU52 694 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 CCDC90BQ9GZT6 254 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 PGAP2Q9UHJ9 254 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 NDUFAF1Q9Y375 327 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 RAI2Q9Y5P3 530 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 MYADML2A6NDP7 307 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 TMEM114B3SHH9 223 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 ATP6V1G2O95670 118 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 CXCR3P49682 368 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 KLF1Q13351 362 aaPredicted RBP13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 PREPLQ4J6C6 727 aaPredicted RBP13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 LINGO4Q6UY18 593 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 RRM2BQ7LG56 351 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 RBM23Q86U06 439 aaKnown RBP13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 TNIP2Q8NFZ5 429 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 SPOCK2Q92563 424 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 ZCWPW1Q9H0M4 648 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 RNF186Q9NXI6 227 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 CLIC5Q9NZA1 410 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 STK39Q9UEW8 545 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 CROTQ9UKG9 612 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 TCAF1Q9Y4C2 921 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 CPQQ9Y646 472 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 SQORQ9Y6N5 450 aa13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 ZFP37Q9Y6Q3 630 aaPredicted RBP13.19□□□□□ -0.3
PCDHA4-202ENST00000512229 IFRD1O00458 451 aaPredicted RBP13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 COL6A2P12110 1019 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 PSMA4P25789 261 aaKnown RBP13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 MC4RP32245 332 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 GRIA1P42261 906 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 ATP6V0D1P61421 351 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 CRY1Q16526 586 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 PPM1JQ5JR12 505 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 CES5AQ6NT32 575 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 SERPINA13PQ6UXR4 307 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 CTU1Q7Z7A3 348 aaKnown RBP13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 RNF148Q8N7C7 305 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 SLC25A23Q9BV35 468 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 MMADHCQ9H3L0 296 aaPredicted RBP13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 SSU72Q9NP77 194 aaKnown RBP13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 PNPLA8Q9NP80 782 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 MAN1C1Q9NR34 630 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 BATF3Q9NR55 127 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 CYTH4Q9UIA0 394 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 PCDHGC4Q9Y5F7 938 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 MGAT4DA6NG13 374 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 MRASO14807 208 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 CATP04040 527 aaKnown RBP13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 GPR17Q13304 367 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 UPP1Q16831 310 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 FAM182AQ5T1J6 154 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 TAGAPQ8N103 731 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 TRPC4APQ8TEL6 797 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 TBC1D10AQ9BXI6 508 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 DPY30Q9C005 99 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 RMND5AQ9H871 391 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 ZMYM5Q9UJ78 669 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 A0A1B0GUL6 1792 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 KANSL1LA0AUZ9 987 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 TBC1D4O60343 1298 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 SEC24DO94855 1032 aaPredicted RBP13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 ANXA5P08758 320 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 PIK3CGP48736 1102 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 RAP1GDS1P52306 607 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 SGCGQ13326 291 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 GRM3Q14832 879 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 ZNF697Q5TEC3 545 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 TPGS2Q68CL5 300 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 ZNF280BQ86YH2 543 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 C8orf48Q96LL4 319 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 FCRL5Q96RD9 977 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 CDRT15Q96T59 188 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 SH3GL1Q99961 368 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 TBC1D14Q9P2M4 693 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 COPG2Q9UBF2 871 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 GNPTGQ9UJJ9 305 aa13.18□□□□□ -0.3
PCDHA4-202ENST00000512229 GNG14A0A1W2PPG7 69 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 LYPLA1O75608 230 aaPredicted RBP13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 RPP40O75818 363 aaKnown RBP13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 HNRNPLP14866 589 aaKnown RBP eCLIP13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 ACADSP16219 412 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 SP100P23497 879 aaPredicted RBP13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 NMBRP28336 390 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 PFKPQ01813 784 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 FRG1Q14331 258 aaKnown RBP13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 FSTL4Q6MZW2 842 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 PQLC3Q8N755 202 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 STYXQ8WUJ0 223 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 COPS8Q99627 209 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 HTATIP2Q9BUP3 242 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 DTNAQ9Y4J8 743 aa13.17□□□□□ -0.3
PCDHA4-202ENST00000512229 MYH15Q9Y2K3 1946 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms