RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZNF641Q96N77 438 aaPredicted RBP21.26■□□□□ 0.99
SQSTM1-210ENST00000506042 WRAP53Q9BUR4 548 aaKnown RBP21.26■□□□□ 0.99
SQSTM1-210ENST00000506042 EDEM3Q9BZQ6 932 aa21.26■□□□□ 0.99
SQSTM1-210ENST00000506042 EPB41L5Q9HCM4 733 aa21.26■□□□□ 0.99
SQSTM1-210ENST00000506042 KLQ9UEF7 1012 aa21.26■□□□□ 0.99
SQSTM1-210ENST00000506042 HEMK1Q9Y5R4 338 aaPredicted RBP21.26■□□□□ 0.99
SQSTM1-210ENST00000506042 BPTFQ12830 3046 aa21.26■□□□□ 0.99
SQSTM1-210ENST00000506042 B8ZZF3 427 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 RNF103O00237 685 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 SPINT1O43278 529 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 TNFP01375 233 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 CYP1A1P04798 512 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 GKP32189 559 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 SOX5P35711 763 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 POLR2LP62875 67 aaKnown RBP21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 TMEM52BQ4KMG9 183 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 ATXN7L2Q5T6C5 722 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 SCYL2Q6P3W7 929 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 RAB11FIP2Q7L804 512 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 JAMLQ86YT9 394 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 TUBGCP5Q96RT8 1024 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 ARHGAP9Q9BRR9 750 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 NUP62CLQ9H1M0 184 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 CLSTN2Q9H4D0 955 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 UBA2Q9UBT2 640 aaPredicted RBP21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 KLF15Q9UIH9 416 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 GPR34Q9UPC5 381 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 PCDHB11Q9Y5F2 797 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 PCDHGA7Q9Y5G6 932 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 CELSR3Q9NYQ7 3312 aa21.25■□□□□ 0.99
SQSTM1-210ENST00000506042 EIF3CLB5ME19 914 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 CACNB4O00305 520 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 PDE2AO00408 941 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 GCATO75600 419 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 CD160O95971 181 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 SFTPCP11686 197 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 GSCP56915 257 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 POLR2FP61218 127 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 PEX6Q13608 980 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 NFATC4Q14934 902 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 IRF4Q15306 451 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 TSR1Q2NL82 804 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 PERM1Q5SV97 790 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 TRNP1Q6NT89 227 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 ENPP7Q6UWV6 458 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 RD3Q7Z3Z2 195 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 TP53I13Q8NBR0 393 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 C3orf20Q8ND61 904 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 GPT2Q8TD30 523 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 CENPIQ92674 756 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 WDR92Q96MX6 357 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 EIF3CQ99613 913 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 ATP13A3Q9H7F0 1226 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 SEPT11Q9NVA2 429 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 KCTD5Q9NXV2 234 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 GGT7Q9UJ14 662 aa21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 NOCTQ9UK39 431 aaKnown RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 ATXN7L1Q9ULK2 861 aaPredicted RBP21.24■□□□□ 0.99
SQSTM1-210ENST00000506042 CREB3O43889 395 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 SERPINA4P29622 427 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 MTM1Q13496 603 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 DPCR1Q3MIW9 517 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 DNAJC24Q6P3W2 148 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 LEKR1Q6ZMV7 388 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 PCDH19Q8TAB3 1148 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 HMCESQ96FZ2 354 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 FAM117AQ9C073 453 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 SUV39H2Q9H5I1 410 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 NDFIP2Q9NV92 336 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 SIRPGQ9P1W8 387 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 ACTL7AQ9Y615 435 aa21.23■□□□□ 0.99
SQSTM1-210ENST00000506042 CFAP69A5D8W1 941 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 ARHGAP42A6NI28 874 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 RASA4BC9J798 803 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 D6RAR5 112 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 RASA4O43374 803 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 HDAC4P56524 1084 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 TPI1P60174 286 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 SRP54P61011 504 aaKnown RBP21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 SKOR1P84550 965 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 SERINC3Q13530 473 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 ARHGEF7Q14155 803 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 UGP2Q16851 508 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 TMEM164Q5U3C3 297 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 DCUN1D2Q6PH85 259 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 USP53Q70EK8 1073 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 NEK11Q8NG66 645 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 SLC30A5Q8TAD4 765 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 CCDC74AQ96AQ1 378 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 CMKLR1Q99788 373 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 APOOQ9BUR5 198 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 FAM207AQ9NSI2 230 aaPredicted RBP21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 CHD5Q8TDI0 1954 aa21.22■□□□□ 0.99
SQSTM1-210ENST00000506042 FAM170AA1A519 330 aa21.21■□□□□ 0.99
SQSTM1-210ENST00000506042 SIGLEC16A6NMB1 481 aa21.21■□□□□ 0.99
SQSTM1-210ENST00000506042 FAM72CH0Y354 149 aa21.21■□□□□ 0.99
SQSTM1-210ENST00000506042 NTN3O00634 580 aaPredicted RBP21.21■□□□□ 0.99
SQSTM1-210ENST00000506042 RPLP0P05388 317 aaKnown RBP21.21■□□□□ 0.99
SQSTM1-210ENST00000506042 TIMP2P16035 220 aa21.21■□□□□ 0.99
SQSTM1-210ENST00000506042 CCKBRP32239 447 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms