RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 HEATR9A2RTY3 570 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 STX16-NPEPL1H3BU86 382 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ADAMTS4O75173 837 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ASGR1P07306 291 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ADSLP30566 484 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 SERPINH1P50454 418 aaKnown RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 DNAJB13P59910 316 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 USP46P62068 366 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 DSC2Q02487 901 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 HERC3Q15034 1050 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 DDR2Q16832 855 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 EML3Q32P44 896 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 KIAA0408Q6ZU52 694 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ZNF280BQ86YH2 543 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PGAM4Q8N0Y7 254 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 UMODL1-AS1Q8N2C9 162 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 RNF148Q8N7C7 305 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 SERPINI1Q99574 410 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ARHGAP39Q9C0H5 1083 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 VCX3BQ9H321 246 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ARNT2Q9HBZ2 717 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PRDM5Q9NQX1 630 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PDP2Q9P2J9 529 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 TLR6Q9Y2C9 796 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 TLL2Q9Y6L7 1015 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 TCAF2A6NFQ2 919 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 A8MT66 165 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 CFLARO15519 480 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 SMIM24O75264 130 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 TADA2AO75478 443 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 UQCRBP14927 111 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 GRK4P32298 578 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 LEPRP48357 1165 aaKnown RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 KPNA2P52292 529 aaKnown RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PLK1P53350 603 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 MRPS22P82650 360 aaKnown RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 MS4A2Q01362 244 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PFKPQ01813 784 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ITKQ08881 620 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 CRHR2Q13324 411 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 MS4A13Q5J8X5 152 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 OGFRL1Q5TC84 451 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 LDB1Q86U70 411 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 LRRC49Q8IUZ0 686 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PELI3Q8N2H9 469 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 ANKRD49Q8WVL7 239 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PSMG2Q969U7 264 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PABPC5Q96DU9 382 aaKnown RBP9.93□□□□□ -0.82
CLIP1-204ENST00000501271 C1orf74Q96LT6 269 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 NPAS2Q99743 824 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 WDR41Q9HAD4 459 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 VPS28Q9UK41 221 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 PSMD13Q9UNM6 376 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 SCML2Q9UQR0 700 aa9.93□□□□□ -0.82
CLIP1-204ENST00000501271 TRPC5OSA6NMA1 111 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 GJB3O75712 270 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 CCDC166P0CW27 439 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 RENBPP51606 427 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 ARSDP51689 593 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 CLCN5P51795 746 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 NDST2P52849 883 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TBX4P57082 545 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 C1QTNF8P60827 252 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 XIAPP98170 497 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 FLOT2Q14254 428 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 PSMD5Q16401 504 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 FAM83EQ2M2I3 478 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 GRAMD1BQ3KR37 738 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 HECTD2Q5U5R9 776 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 MSANTD2Q6P1R3 559 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 FBXL19Q6PCT2 694 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 GK5Q6ZS86 529 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 PTAR1Q7Z6K3 402 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 SDCCAG8Q86SQ7 713 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 MON1AQ86VX9 555 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 CILP2Q8IUL8 1156 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 PQLC1Q8N2U9 271 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TTC9BQ8N6N2 239 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 HMGCLL1Q8TB92 370 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 GPR152Q8TDT2 470 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 SH3RF2Q8TEC5 729 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 RANBP9Q96S59 729 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TSC22D3Q99576 134 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 ZCWPW1Q9H0M4 648 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 RRAGCQ9HB90 399 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 SPC25Q9HBM1 224 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TRMT13Q9NUP7 481 aaKnown RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 GMIPQ9P107 970 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 GABRQQ9UN88 632 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 GREB1Q4ZG55 1949 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 OR51F1A6NGY5 319 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 CAPN8A6NHC0 703 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 IPO13O94829 963 aaKnown RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TBX18O95935 607 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 RPLP2P05387 115 aaKnown RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 LTA4HP09960 611 aaKnown RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 RHOQP17081 205 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 VCLP18206 1134 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 ALDH1A3P47895 512 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 ATXN3P54252 364 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms