RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 CAPN11Q9UMQ6 739 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 LUC7L2Q9Y383 392 aaKnown RBP12.87□□□□□ -0.35
PTPRF-214ENST00000496043 PTPRBP23467 1997 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 FRYQ5TBA9 3013 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 AKAP13Q12802 2813 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 TSPAN11A1L157 253 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 TMEM110-MUSTN1A8MSY1 372 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 H3BRJ5 948 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 RIOK3O14730 519 aaKnown RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 AQP9O43315 295 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 MT-CO3P00414 261 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 SERPINA4P29622 427 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 EIF4A3P38919 411 aaKnown RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 POLR2LP62875 67 aaKnown RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 INSM1Q01101 510 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 BCL2L1Q07817 233 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 EIF2B5Q13144 721 aaKnown RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 LRRC14Q15048 493 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 FAXCQ5TGI0 409 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 CYP4V2Q6ZWL3 525 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 PAF1Q8N7H5 531 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 LMX1AQ8TE12 382 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 CINPQ9BW66 212 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 NRSN2Q9GZP1 204 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 CAAP1Q9H8G2 361 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 PCDH12Q9NPG4 1184 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 MBNL1Q9NR56 388 aaKnown RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 NCKIPSDQ9NZQ3 722 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 SPASTQ9UBP0 616 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 IP6K2Q9UHH9 426 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 KLF15Q9UIH9 416 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 SALL4Q9UJQ4 1053 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 LHX6Q9UPM6 363 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 CLCA2Q9UQC9 943 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 RAXQ9Y2V3 346 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 AK5Q9Y6K8 562 aa12.86□□□□□ -0.35
PTPRF-214ENST00000496043 ARID1BQ8NFD5 2236 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-214ENST00000496043 CFAP69A5D8W1 941 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 TPP1O14773 563 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 LZTS3O60299 673 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-214ENST00000496043 NEBLO76041 1014 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 AMPD1P23109 780 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 IL1R2P27930 398 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 IGFALSP35858 605 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 PEX5P50542 639 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 SCNN1BP51168 640 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 DPYSQ14117 519 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 LBRQ14739 615 aaKnown RBP12.85□□□□□ -0.35
PTPRF-214ENST00000496043 DPYSL2Q16555 572 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 TPRG1LQ5T0D9 272 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 CCDC122Q5T0U0 273 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 TMCO4Q5TGY1 634 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 ZCCHC8Q6NZY4 707 aaKnown RBP12.85□□□□□ -0.35
PTPRF-214ENST00000496043 C19orf48Q6RUI8 117 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 POLNQ7Z5Q5 900 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 TP53I13Q8NBR0 393 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-214ENST00000496043 ZNF548Q8NEK5 533 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-214ENST00000496043 HNRNPLLQ8WVV9 542 aaKnown RBP12.85□□□□□ -0.35
PTPRF-214ENST00000496043 HSPH1Q92598 858 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 GLMNQ92990 594 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 NXPE2Q96DL1 559 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 ZNF599Q96NL3 588 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 IL12RB2Q99665 862 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 SLC13A1Q9BZW2 595 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 THAP2Q9H0W7 228 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 ABCG4Q9H172 646 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 SEPT3Q9UH03 358 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 RALYQ9UKM9 306 aaKnown RBP12.85□□□□□ -0.35
PTPRF-214ENST00000496043 GPSM3Q9Y4H4 160 aa12.85□□□□□ -0.35
PTPRF-214ENST00000496043 A0A087X0T9 212 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 MYO1FO00160 1098 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 OPA1O60313 960 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 CYP1A2P05177 515 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 GP1BAP07359 652 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 FAM228BP0C875 321 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 RARAP10276 462 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 MYF5P13349 255 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 HTR1BP28222 390 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 RGRP47804 291 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 LIG3P49916 1009 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 BLKP51451 505 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 ADKP55263 362 aaKnown RBP12.84□□□□□ -0.35
PTPRF-214ENST00000496043 PPARDQ03181 441 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 RTP5Q14D33 572 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 AGERQ15109 404 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 SMTNL2Q2TAL5 461 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 WSCD2Q2TBF2 565 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 ALKBH5Q6P6C2 394 aaKnown RBP12.84□□□□□ -0.35
PTPRF-214ENST00000496043 TMCO3Q6UWJ1 677 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 KDM7AQ6ZMT4 941 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 ARHGAP36Q6ZRI8 547 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 PHACTR4Q8IZ21 702 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 NPWQ8N729 165 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 NIPA2Q8N8Q9 360 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 DCBLD1Q8N8Z6 715 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 TEKT4Q8WW24 435 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 TBATAQ96M53 351 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 PSKH2Q96QS6 385 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 APOOQ9BUR5 198 aa12.84□□□□□ -0.35
PTPRF-214ENST00000496043 NUP85Q9BW27 656 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms