RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ZFYVE28Q9HCC9 887 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 ABCC13Q9NSE7 274 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 OXSMQ9NWU1 459 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 DNAJB4Q9UDY4 337 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 MYO16Q9Y6X6 1858 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 PTPRDP23468 1912 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 M0QZQ0 153 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 CCNCP24863 283 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 OR1G1P47890 313 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 SCNN1BP51168 640 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 PRAMEP78395 509 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 TBCCQ15814 346 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 FBXO48Q5FWF7 155 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 RBM20Q5T481 1227 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 KBTBD6Q86V97 674 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 MIB1Q86YT6 1006 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 SNRNP27Q8WVK2 155 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 TMIGD2Q96BF3 282 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 RHOJQ9H4E5 214 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 PREBQ9HCU5 417 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 NT5MQ9NPB1 228 aa16.67■□□□□ 0.26
CCDC88B-210ENST00000494566 FAM95CA0A1B0GW59 222 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 MAGEB16A2A368 324 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CYP11A1P05108 521 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 SMIM18P0DKX4 95 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 TFEBP19484 476 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CSE1LP55060 971 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CDH15P55291 814 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CDK18Q07002 472 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 EIF4EBP2Q13542 120 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 PPP1R3AQ16821 1122 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 PCID2Q5JVF3 399 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CNSTQ6PJW8 725 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 BNC2Q6ZN30 1099 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 MRGPRX2Q96LB1 330 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 ILKAPQ9H0C8 392 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CDY1Q9Y6F8 540 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 MATN3O15232 486 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 ADAMTS4O75173 837 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 SEC24DO94855 1032 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 HAPLN1P10915 354 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 COG7P83436 770 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 IRF5Q13568 498 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CYLC2Q14093 348 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 IHHQ14623 411 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 DBN1Q16643 649 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 LRRC23Q53EV4 343 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 ALFQ53S48 1182 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 FSCBQ5H9T9 825 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 SEL1L3Q68CR1 1132 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 EGFL6Q8IUX8 553 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 MYO1HQ8N1T3 1032 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 KYQ8NBH2 561 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 ATAD1Q8NBU5 361 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 PHF21BQ96EK2 531 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 MRPL1Q9BYD6 325 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 FAM192AQ9GZU8 254 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 NOL6Q9H6R4 1146 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 WDR41Q9HAD4 459 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 CCDC167Q9P0B6 97 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 GIMAP2Q9UG22 337 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 IPO11Q9UI26 975 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 AAR2Q9Y312 384 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 H3BSA7 217 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 ARCN1P48444 511 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 TAS2R39P59534 338 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 EFEMP1Q12805 493 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 DSC3Q14574 896 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 PSMD5Q16401 504 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 IL23RQ5VWK5 629 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 AAGABQ6PD74 315 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 KLHDC10Q6PID8 442 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 RTN4RL1Q86UN2 441 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 OR9I1Q8NGQ6 314 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 FCRL5Q96RD9 977 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 IL12RB2Q99665 862 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 HCSTQ9UBK5 93 aa16.66■□□□□ 0.26
CCDC88B-210ENST00000494566 MAGEB3O15480 346 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 DLX3O60479 287 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 ZNF623O75123 536 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 TFAP2AP05549 437 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 MYBPC1Q00872 1141 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 SLC10A7Q0GE19 358 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 MYLK3Q32MK0 819 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 SH2D4BQ5SQS7 431 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 MANEALQ5VSG8 457 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 MFSD14CQ5VZR4 134 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 LRRC8EQ6NSJ5 796 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 LINC00523Q86TU6 105 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 SAPCD2Q86UD0 394 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 PPHLN1Q8NEY8 458 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 SUSD3Q96L08 255 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 VCX3BQ9H321 246 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 SMOC2Q9H3U7 446 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 CATSPERBQ9H7T0 1116 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 VCX3AQ9NNX9 186 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 TCAF1Q9Y4C2 921 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 ALOX15P16050 662 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 CD86P42081 329 aa16.65■□□□□ 0.26
CCDC88B-210ENST00000494566 RGMBQ6NW40 437 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms