RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 TOPORSQ9NS56 1045 aaPredicted RBP4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 RAB20Q9NX57 234 aa4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 MCM9Q9NXL9 1143 aa4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 IFT80Q9P2H3 777 aaPredicted RBP4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 POLHQ9Y253 713 aa4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 NOSIPQ9Y314 301 aaKnown RBP4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 RWDD3Q9Y3V2 267 aa4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 TEX264Q9Y6I9 313 aa4.81□□□□□ -1.64
SNRNP40-206ENST00000489853 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 LINC00854A0A1B0GVQ3 168 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 A0A1W2PP55 124 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 A0A1W2PQ72 361 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 C16orf96A6NNT2 1141 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SLC9A3R1O14745 358 aaPredicted RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SGTAO43765 313 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SYNCRIPO60506 623 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 UPK1BO75841 260 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 KCNK2O95069 426 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 EPN2O95208 641 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PRLP01236 227 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 C1QAP02745 245 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PGK2P07205 417 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 TRIM49P0CI25 452 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 TRIM49CP0CI26 452 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ENO3P13929 434 aaPredicted RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CKMT2P17540 419 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CD58P19256 250 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PRKCHP24723 683 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CNTFP26441 200 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 RPL22P35268 128 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SERPINB5P36952 375 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 POLR2IP36954 125 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 DDOSTP39656 456 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PTPN9P43378 593 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CBX5P45973 191 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ARCN1P48444 511 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PLA2G16P53816 162 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 MAP3K7CLP57077 242 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SRP54P61011 504 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 DYNLL1P63167 89 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 BNC1Q01954 994 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PRKCEQ02156 737 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 GAD2Q05329 585 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 AQP6Q13520 282 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CHRNA2Q15822 529 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CARTPTQ16568 116 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ZFP69Q49AA0 526 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ATAD3CQ5T2N8 411 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 LIN9Q5TKA1 542 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SLC9A4Q6AI14 798 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 RINT1Q6NUQ1 792 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 FAM171BQ6P995 826 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ATG14Q6ZNE5 492 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 STXBP4Q6ZWJ1 553 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 USP51Q70EK9 711 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PIWIL3Q7Z3Z3 882 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SPRED1Q7Z699 444 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SLC47A2Q86VL8 602 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CDR2LQ86X02 465 aaPredicted RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 LYSMD2Q8IV50 215 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CCDC103Q8IW40 242 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ADGRF2Q8IZF7 708 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 TCAIMQ8N3R3 496 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CBR4Q8N4T8 237 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 CELF2-AS1Q8N7Q2 184 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PPM1NQ8N819 430 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ZSWIM2Q8NEG5 633 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 IL17RDQ8NFM7 739 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 OR5H6Q8NGV6 325 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 LHFPL5Q8TAF8 219 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 DDX1Q92499 740 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 SHC3Q92529 594 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PIK3R3Q92569 461 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 LPGAT1Q92604 370 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 HTRA1Q92743 480 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 USP13Q92995 863 aaPredicted RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PPWD1Q96BP3 646 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 RCN3Q96D15 328 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 MBOAT7Q96N66 472 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 TWNKQ96RR1 684 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 C17orf62Q9BQA9 187 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ACAT2Q9BWD1 397 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ZCCHC2Q9C0B9 1178 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 MTMR12Q9C0I1 747 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 LHPPQ9H008 270 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 EHMT1Q9H9B1 1298 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 COG4Q9H9E3 785 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 DDX28Q9NUL7 540 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 DCDC2Q9UHG0 476 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PPT2Q9UMR5 302 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 FNDC3AQ9Y2H6 1198 aaKnown RBP4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PLCH1Q4KWH8 1693 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 ZNF804BA4D1E1 1349 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 LTN1O94822 1766 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 RNF103-CHMP3A0A140T963 221 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 C12orf71A8MTZ7 269 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 PDZK1P1A8MUH7 402 aa4.8□□□□□ -1.64
SNRNP40-206ENST00000489853 METTL12A8MUP2 240 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms