RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 TMEM63BQ5T3F8 832 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 CDC73Q6P1J9 531 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PDXDC1Q6P996 788 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 TRIM72Q6ZMU5 477 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 RTL10Q7L3V2 364 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 SZRD1Q7Z422 152 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 RHPN2Q8IUC4 686 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 C17orf53Q8N3J3 647 aaPredicted RBP4.27□□□□□ -1.73
PTCD3-216ENST00000487043 CPXM2Q8N436 756 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 WDTC1Q8N5D0 677 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 SCAIQ8N9R8 606 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 SCFD2Q8WU76 684 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 CALML4Q96GE6 196 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 ZNF347Q96SE7 839 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 MXD3Q9BW11 206 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 PLSCR4Q9NRQ2 329 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 GAR1Q9NY12 217 aaKnown RBP4.27□□□□□ -1.73
PTCD3-216ENST00000487043 ZNF70Q9UC06 446 aaPredicted RBP4.27□□□□□ -1.73
PTCD3-216ENST00000487043 DHDHQ9UQ10 334 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 DTX4Q9Y2E6 619 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 DISP2A7MBM2 1401 aa4.27□□□□□ -1.73
PTCD3-216ENST00000487043 NRAPQ86VF7 1730 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 LRRC37A3O60309 1634 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 LRP6O75581 1613 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 A0A087X1B8 175 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 C17orf113A0A1B0GUU1 675 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 A0A1W2PQM1 296 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 OR6C68A6NDL8 312 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 PABPN1LA6NDY0 278 aaKnown RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 GCOM1H8Y6P7 765 aaPredicted RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 IPO8O15397 1037 aaKnown RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 DNTTP04053 509 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 HNRNPCP07910 306 aaKnown RBP eCLIP4.26□□□□□ -1.732e-6■□□□□ 11.2
PTCD3-216ENST00000487043 HOXB7P09629 217 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 CSH1P0DML2 217 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 CSH2P0DML3 217 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 FCGR2AP12318 317 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 AKR1A1P14550 325 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 TM4SF1P30408 202 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 FMO4P31512 558 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 CPOXP36551 454 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 PLA2G5P39877 138 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 CLK3P49761 638 aaKnown RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 INHBCP55103 352 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 HOXA4Q00056 320 aaPredicted RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 ZBTB16Q05516 673 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 FOXI1Q12951 378 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 ACVR2BQ13705 512 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SEMA3AQ14563 771 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 PFKFB3Q16875 520 aaPredicted RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 EDRF1Q3B7T1 1238 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 DUSP28Q4G0W2 176 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 TSTD2Q5T7W7 516 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 MEX3CQ5U5Q3 659 aaKnown RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 FNDC7Q5VTL7 733 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 ZKSCAN2Q63HK3 967 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 TTI2Q6NXR4 508 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 AADACL2Q6P093 401 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 C17orf99Q6UX52 265 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 Q6YL49 198 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 MOB3CQ70IA8 216 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 TADA2BQ86TJ2 420 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 KLBQ86Z14 1044 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 RFX6Q8HWS3 928 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 VRK3Q8IV63 474 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 C16orf71Q8IYS4 520 aaPredicted RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 ULK2Q8IYT8 1036 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 TAGAPQ8N103 731 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 AMER2Q8N7J2 671 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 FRMD1Q8N878 549 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 EXD3Q8N9H8 876 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 CADM4Q8NFZ8 388 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 LINC00476Q8WZB0 136 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 ARHGAP45Q92619 1136 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SMARCE1Q969G3 411 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 INTS12Q96CB8 462 aaKnown RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 ZNF764Q96H86 408 aaPredicted RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 COQ10AQ96MF6 247 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SLF1Q9BQI6 1058 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SMARCAD1Q9H4L7 1026 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 MMRN2Q9H8L6 949 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 Q9N2J8 555 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SNTG1Q9NSN8 517 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SYBUQ9NX95 663 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 EHD2Q9NZN4 543 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SH3BP4Q9P0V3 963 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 NLKQ9UBE8 527 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 HSPB7Q9UBY9 170 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 MKLN1Q9UL63 735 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 TMEM5Q9Y2B1 443 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 EPN1Q9Y6I3 576 aaPredicted RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 SCN11AQ9UI33 1791 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 KDM6AO15550 1401 aaPredicted RBP4.26□□□□□ -1.73
PTCD3-216ENST00000487043 HEG1Q9ULI3 1381 aa4.26□□□□□ -1.73
PTCD3-216ENST00000487043 AFF2P51816 1311 aa4.25□□□□□ -1.73
PTCD3-216ENST00000487043 EMSYQ7Z589 1322 aa4.25□□□□□ -1.73
PTCD3-216ENST00000487043 TCRBV5S1A1TA0A578 114 aa4.25□□□□□ -1.73
PTCD3-216ENST00000487043 LIPT2A6NK58 231 aa4.25□□□□□ -1.73
PTCD3-216ENST00000487043 AGAP14A8MT82 685 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms