RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 BRWD1-AS2P59051 145 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 TBL3Q12788 808 aaKnown RBP4.01□□□□□ -1.77
VPS41-213ENST00000485955 HSPB2Q16082 182 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 ZNF672Q499Z4 452 aaPredicted RBP4.01□□□□□ -1.77
VPS41-213ENST00000485955 ESCO2Q56NI9 601 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 WDR45BQ5MNZ6 344 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 USP43Q70EL4 1123 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 ZNF771Q7L3S4 317 aaPredicted RBP4.01□□□□□ -1.77
VPS41-213ENST00000485955 SFTPA2Q8IWL1 248 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 RUFY2Q8WXA3 655 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 ERGIC1Q969X5 290 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 LRFN5Q96NI6 719 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 CD180Q99467 661 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 PYM1Q9BRP8 204 aaKnown RBP4.01□□□□□ -1.77
VPS41-213ENST00000485955 VPS33BQ9H267 617 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 TXLNGQ9NUQ3 528 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 MDFICQ9P1T7 246 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 SLC9A2Q9UBY0 812 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 NFS1Q9Y697 457 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 UNC13AQ9UPW8 1703 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 A0A0U1RQF3 1178 aa4□□□□□ -1.77
VPS41-213ENST00000485955 CPED1A4D0V7 1026 aa4□□□□□ -1.77
VPS41-213ENST00000485955 TULP2O00295 520 aa4□□□□□ -1.77
VPS41-213ENST00000485955 IGKV3-20P01619 116 aa4□□□□□ -1.77
VPS41-213ENST00000485955 IGHV4-30-4P0DP06 118 aa4□□□□□ -1.77
VPS41-213ENST00000485955 ITGAXP20702 1163 aa4□□□□□ -1.77
VPS41-213ENST00000485955 BLKP51451 505 aa4□□□□□ -1.77
VPS41-213ENST00000485955 CCR5P51681 352 aa4□□□□□ -1.77
VPS41-213ENST00000485955 POU5F1BQ06416 359 aa4□□□□□ -1.77
VPS41-213ENST00000485955 SNTA1Q13424 505 aa4□□□□□ -1.77
VPS41-213ENST00000485955 ZNF667Q5HYK9 610 aa4□□□□□ -1.77
VPS41-213ENST00000485955 WBP2NLQ6ICG8 309 aa4□□□□□ -1.77
VPS41-213ENST00000485955 SHFQ7M4L6 423 aa4□□□□□ -1.77
VPS41-213ENST00000485955 ZNF329Q86UD4 541 aa4□□□□□ -1.77
VPS41-213ENST00000485955 CPOQ8IVL8 374 aa4□□□□□ -1.77
VPS41-213ENST00000485955 PARP16Q8N5Y8 322 aa4□□□□□ -1.77
VPS41-213ENST00000485955 GJC3Q8NFK1 279 aa4□□□□□ -1.77
VPS41-213ENST00000485955 SNAPC3Q92966 411 aa4□□□□□ -1.77
VPS41-213ENST00000485955 CSF3RQ99062 836 aa4□□□□□ -1.77
VPS41-213ENST00000485955 EYA3Q99504 573 aa4□□□□□ -1.77
VPS41-213ENST00000485955 TTYH1Q9H313 450 aaPredicted RBP4□□□□□ -1.77
VPS41-213ENST00000485955 PPCSQ9HAB8 311 aa4□□□□□ -1.77
VPS41-213ENST00000485955 ALKBH4Q9NXW9 302 aa4□□□□□ -1.77
VPS41-213ENST00000485955 PEMTQ9UBM1 199 aa4□□□□□ -1.77
VPS41-213ENST00000485955 PAM16Q9Y3D7 125 aa4□□□□□ -1.77
VPS41-213ENST00000485955 GREB1LQ9C091 1923 aaPredicted RBP3.99□□□□□ -1.77
VPS41-213ENST00000485955 MAGEA13PA6NCF6 341 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 PRAC2D3DTV9 90 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 GRID2O43424 1007 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 TSPAN3O60637 253 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 ZNF8P17098 575 aaPredicted RBP3.99□□□□□ -1.77
VPS41-213ENST00000485955 PEX5P50542 639 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 NR1H2P55055 460 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 HDAC4P56524 1084 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 CHRNDQ07001 517 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 TDGQ13569 410 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 ARHGEF6Q15052 776 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 EFNB3Q15768 340 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 KRTAP24-1Q3LI83 254 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 MAP3K21Q5TCX8 1036 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 KLHL24Q6TFL4 600 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 BBS12Q6ZW61 710 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 ADGRG6Q86SQ4 1221 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 TBC1D26Q86UD7 250 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 ZC3HC1Q86WB0 502 aaKnown RBP3.99□□□□□ -1.77
VPS41-213ENST00000485955 RFLNBQ8N5W9 214 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 PLD5Q8N7P1 536 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 ELP4Q96EB1 424 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 ISCA1Q9BUE6 129 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 NOX4Q9NPH5 578 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 RIC8AQ9NPQ8 531 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 DONSONQ9NYP3 566 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 NFE2L3Q9Y4A8 694 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 SNX9Q9Y5X1 595 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 A3GALT2U3KPV4 340 aa3.99□□□□□ -1.77
VPS41-213ENST00000485955 SAA2-SAA4A0A096LPE2 208 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 BUB3O43684 328 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 KLK8O60259 260 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 ZIC3O60481 467 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 KDM4BO94953 1096 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 CLDN14O95500 239 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 SLC2A4P14672 509 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 PTPN2P17706 415 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 POU3F1Q03052 451 aaPredicted RBP3.98□□□□□ -1.77
VPS41-213ENST00000485955 RUNX2Q13950 521 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 ZRSR1Q15695 479 aaKnown RBP3.98□□□□□ -1.77
VPS41-213ENST00000485955 PAPPA-AS1Q5QFB9 102 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 ATG16L1Q676U5 607 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 LRRC8EQ6NSJ5 796 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 NOXA1Q86UR1 476 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 FAM160B2Q86V87 743 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 KIAA2013Q8IYS2 634 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 MUC20Q8N307 709 aaPredicted RBP3.98□□□□□ -1.77
VPS41-213ENST00000485955 SORCS1Q8WY21 1168 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 HERVK_113Q902F9 699 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 BICD1Q96G01 975 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 IL17FQ96PD4 163 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 INPP4AQ96PE3 977 aaPredicted RBP3.98□□□□□ -1.77
VPS41-213ENST00000485955 HERPUD2Q9BSE4 406 aa3.98□□□□□ -1.77
VPS41-213ENST00000485955 NUF2Q9BZD4 464 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms