RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HACD1B0YJ81 288 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 VILLO15195 856 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 RAD51CO43502 376 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 PLRG1O43660 514 aaKnown RBP17.26■□□□□ 0.35
VIM-205ENST00000485947 ECEL1O95672 775 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 ITGAVP06756 1048 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 TUBBP07437 444 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 PECAM1P16284 738 aaPredicted RBP17.26■□□□□ 0.35
VIM-205ENST00000485947 DRD3P35462 400 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 EIF3EP60228 445 aaKnown RBP17.26■□□□□ 0.35
VIM-205ENST00000485947 DR1Q01658 176 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 OASLQ15646 514 aaKnown RBP17.26■□□□□ 0.35
VIM-205ENST00000485947 ERCC6LQ2NKX8 1250 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 HLA-BQ31612 363 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 SLC45A4Q5BKX6 768 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 RWDD4Q6NW29 188 aaKnown RBP17.26■□□□□ 0.35
VIM-205ENST00000485947 Q6ZVU0 165 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 PCDH20Q8N6Y1 951 aaKnown RBP17.26■□□□□ 0.35
VIM-205ENST00000485947 DEFB124Q8NES8 71 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 OR2A12Q8NGT7 310 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 OR14C36Q8NHC7 312 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 PIP4K2CQ8TBX8 421 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 HAUS1Q96CS2 278 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 ACE2Q9BYF1 805 aaPredicted RBP17.26■□□□□ 0.35
VIM-205ENST00000485947 GAREM1Q9H706 876 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 PREBQ9HCU5 417 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 ATP13A1Q9HD20 1204 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 FSCN3Q9NQT6 498 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 ETNK2Q9NVF9 386 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 AMACRQ9UHK6 382 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 DNPEPQ9ULA0 475 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 HPCAL4Q9UM19 191 aa17.26■□□□□ 0.35
VIM-205ENST00000485947 UQCRHLA0A096LP55 91 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 CFAP69A5D8W1 941 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 ZSCAN5CA6NGD5 496 aaPredicted RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 PCNX2A6NKB5 2137 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 SNAP91O60641 907 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 MAGEC1O60732 1142 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 ZMPSTE24O75844 475 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 GAS8O95995 478 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 UQCRHP07919 91 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 RHOXF2BP0C7M4 288 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 RBP3P10745 1247 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 VAV1P15498 845 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 CSNK1EP49674 416 aaKnown RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 SERPINH1P50454 418 aaKnown RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 OVGP1Q12889 678 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 SNX1Q13596 522 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 NPNTQ6UXI9 565 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 PRPF39Q86UA1 669 aaKnown RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 NLRP14Q86W24 1093 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 TRIM69Q86WT6 500 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 JAMLQ86YT9 394 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 CDKL3Q8IVW4 592 aaPredicted RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 RTL3Q8N8U3 475 aaKnown RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 PPP1R16AQ96I34 528 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 LRIG1Q96JA1 1093 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 RHOXF2Q9BQY4 288 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 BRD8Q9H0E9 1235 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 RAB17Q9H0T7 212 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 DTLQ9NZJ0 730 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.25■□□□□ 0.35
VIM-205ENST00000485947 ZNF148Q9UQR1 794 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 ANKRD6Q9Y2G4 727 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 HEY1Q9Y5J3 304 aa17.25■□□□□ 0.35
VIM-205ENST00000485947 V9GYY5 206 aaPredicted RBP17.25■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3DA0A087WVF3 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3IA0A087WXS9 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3EA0A087X179 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3KA0A087X1G2 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 A0A1B0GVT2 93 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3FA6NER0 549 aaPredicted RBP17.24■□□□□ 0.35
VIM-205ENST00000485947 FAM47DPA6NHR8 397 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3LB9A6J9 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 CBX4O00257 560 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 GIPC1O14908 333 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 PPP1R12AO14974 1030 aaPredicted RBP17.24■□□□□ 0.35
VIM-205ENST00000485947 YKT6O15498 198 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 FLRT2O43155 660 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 MFSD11O43934 449 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 PCDHGA12O60330 932 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 RNGTTO60942 597 aaKnown RBP17.24■□□□□ 0.35
VIM-205ENST00000485947 MT-CO1P00395 513 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3HP0C7X1 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 MX2P20592 715 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 MCM3P25205 808 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 PTGIRP43119 386 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 YBEYP58557 167 aaPredicted RBP17.24■□□□□ 0.35
VIM-205ENST00000485947 BNC1Q01954 994 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 GBE1Q04446 702 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 PDK1Q15118 436 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 ZNF423Q2M1K9 1284 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 KIF19Q2TAC6 998 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3GQ6DHY5 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 TBC1D3CQ6IPX1 549 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 C22orf39Q6P5X5 142 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 GLRX5Q86SX6 157 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 IQCHQ86VS3 1027 aa17.24■□□□□ 0.35
VIM-205ENST00000485947 NAXDQ8IW45 347 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms