RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TFPIP10646 304 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 PCNAP12004 261 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 CLCN5P51795 746 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 NR1H2P55055 460 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 GALNT2Q10471 571 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 RUNX2Q13950 521 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 CTTNQ14247 550 aaKnown RBP6.17□□□□□ -1.42
USP40-213ENST00000483216 TAF11Q15544 211 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 MEPCEQ7L2J0 689 aaKnown RBP6.17□□□□□ -1.42
USP40-213ENST00000483216 LURAP1LQ8IV03 231 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 MB21D2Q8IYB1 491 aaPredicted RBP6.17□□□□□ -1.42
USP40-213ENST00000483216 OR14A16Q8NHC5 309 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 NEUROG1Q92886 237 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 SNAPC3Q92966 411 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 SEZ6LQ9BYH1 1024 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 KRTAP9-8Q9BYQ0 159 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 TMEM51Q9NW97 253 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 CRYL1Q9Y2S2 319 aa6.17□□□□□ -1.42
USP40-213ENST00000483216 MAP3K1Q13233 1512 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 ZNF608Q9ULD9 1512 aaPredicted RBP6.16□□□□□ -1.42
USP40-213ENST00000483216 A0A0U1RQF3 1178 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 A0A1B0GVC2 190 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 A0A1B0GVM2 712 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 KLRF2D3W0D1 207 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 NPHP1O15259 732 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 PRSS2P07478 247 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 GALTP07902 379 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 ACAA1P09110 424 aaPredicted RBP6.16□□□□□ -1.42
USP40-213ENST00000483216 FMO4P31512 558 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 PRICKLE4Q2TBC4 344 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 PRAMEF19Q5SWL8 479 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 GPAT4Q86UL3 456 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 SPATA2LQ8IUW3 424 aaPredicted RBP6.16□□□□□ -1.42
USP40-213ENST00000483216 CLIP4Q8N3C7 705 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 NEXN-AS1Q8NBZ9 246 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 IL17REQ8NFR9 667 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 RNF125Q96EQ8 232 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 C9orf78Q9NZ63 289 aaPredicted RBP6.16□□□□□ -1.42
USP40-213ENST00000483216 AGO1Q9UL18 857 aaKnown RBP6.16□□□□□ -1.42
USP40-213ENST00000483216 CARD8Q9Y2G2 431 aa6.16□□□□□ -1.42
USP40-213ENST00000483216 TDRD9Q8NDG6 1382 aaKnown RBP6.16□□□□□ -1.42
USP40-213ENST00000483216 AQRO60306 1485 aaKnown RBP eCLIP6.15□□□□□ -1.42
USP40-213ENST00000483216 ABCA5Q8WWZ7 1642 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 HSPB2A8KAH6 182 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 TSPAN4O14817 238 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 SLC28A2O43868 658 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 ATP2C2O75185 946 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 HEXAP06865 529 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 CBSLP0DN79 551 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 COX7A2P14406 83 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 CBSP35520 551 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 GGT5P36269 586 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 TUBP50607 506 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 CLDN2P57739 230 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 UFM1P61960 85 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 HSPB2Q16082 182 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 HSP90AB4PQ58FF6 505 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 SLC9C2Q5TAH2 1124 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 RRM2BQ7LG56 351 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 KIAA2013Q8IYS2 634 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 GJC3Q8NFK1 279 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 FAM216AQ8WUB2 273 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 ST8SIA4Q92187 359 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 TRIB2Q92519 343 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 NAF1Q96HR8 494 aaKnown RBP6.15□□□□□ -1.42
USP40-213ENST00000483216 MEIS3Q99687 375 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 LBHD1Q9BQE6 289 aaPredicted RBP6.15□□□□□ -1.42
USP40-213ENST00000483216 HSPB7Q9UBY9 170 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 CYP46A1Q9Y6A2 500 aa6.15□□□□□ -1.42
USP40-213ENST00000483216 DHX57Q6P158 1386 aaKnown RBP6.15□□□□□ -1.43
USP40-213ENST00000483216 EFCAB5A4FU69 1503 aa6.15□□□□□ -1.43
USP40-213ENST00000483216 CTTNBP2Q8WZ74 1663 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 CREB3O43889 395 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 TACC1O75410 805 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 POU1F1P28069 291 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 MXI1P50539 228 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 SOWAHAQ2M3V2 549 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 ESCO2Q56NI9 601 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 EFHC1Q5JVL4 640 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 CES5AQ6NT32 575 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 TSPYL6Q8N831 410 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 SLC25A33Q9BSK2 321 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 CYSLTR2Q9NS75 346 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 A3GALT2U3KPV4 340 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 FHAD1B1AJZ9 1412 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 RRBP1Q9P2E9 1410 aaKnown RBP6.14□□□□□ -1.43
USP40-213ENST00000483216 TIAM1Q13009 1591 aa6.14□□□□□ -1.43
USP40-213ENST00000483216 TARBP1Q13395 1621 aaKnown RBP6.14□□□□□ -1.43
USP40-213ENST00000483216 TAF4O00268 1085 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 IKBKBO14920 756 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 VNN2O95498 520 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 TNFRSF8P28908 595 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 HDAC4P56524 1084 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 VEPH1Q14D04 833 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 CCDC129Q6ZRS4 1044 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 ADHFE1Q8IWW8 467 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 CCDC105Q8IYK2 499 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 PARP16Q8N5Y8 322 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 AADATQ8N5Z0 425 aa6.13□□□□□ -1.43
USP40-213ENST00000483216 ZC3HAV1LQ96H79 300 aaKnown RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms