RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PRCCQ92733 491 aaPredicted RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 ARRDC3Q96B67 414 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 SNF8Q96H20 258 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 PPP1R16AQ96I34 528 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 FEM1CQ96JP0 617 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 MRGPRX1Q96LB2 322 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 HHIPQ96QV1 700 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 TBL1YQ9BQ87 522 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 APOL2Q9BQE5 337 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 RHOXF2Q9BQY4 288 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 FSD1LQ9BXM9 530 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 TDRD1Q9BXT4 1180 aaKnown RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 DYRK4Q9NR20 520 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 SPATA6Q9NWH7 488 aaPredicted RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 BCCIPQ9P287 314 aaKnown RBP eCLIP12.34□□□□□ -0.43
SDC1-206ENST00000482879 DKK3Q9UBP4 350 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 DMGDHQ9UI17 866 aaKnown RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 ARIH1Q9Y4X5 557 aaPredicted RBP12.34□□□□□ -0.43
SDC1-206ENST00000482879 A0A0C4DFX4 3053 aa12.34□□□□□ -0.43
SDC1-206ENST00000482879 LOC285095A0A1B0GVY8 99 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 A0A1W2PQ67 120 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 TCRBV7S3A2A0A539 114 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 C16orf96A6NNT2 1141 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 FZD6O60353 706 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 USP12O75317 370 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 APBB3O95704 486 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 NDST3O95803 873 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 PRLP01236 227 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 EPOP01588 193 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ACADMP11310 421 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 TIMP2P16035 220 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 NDUFV2P19404 249 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ITIH2P19823 946 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 TPSB2P20231 275 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 XPAP23025 273 aaPredicted RBP12.33□□□□□ -0.44
SDC1-206ENST00000482879 ITGB7P26010 798 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ADRA1AP35348 466 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 MAGEA6P43360 314 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 RPL21P46778 160 aaKnown RBP12.33□□□□□ -0.44
SDC1-206ENST00000482879 METAP1P53582 386 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 EPHB1P54762 984 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 POLR2LP62875 67 aaKnown RBP12.33□□□□□ -0.44
SDC1-206ENST00000482879 TUBB4BP68371 445 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 CDK16Q00536 496 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 GUCY2DQ02846 1103 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ZBTB16Q05516 673 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 OLIG2Q13516 323 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 KCNJ11Q14654 390 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 TPSAB1Q15661 275 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 RNASEH2BQ5TBB1 312 aaKnown RBP12.33□□□□□ -0.44
SDC1-206ENST00000482879 ANKRD22Q5VYY1 191 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 NAPEPLDQ6IQ20 393 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ANO7Q6IWH7 933 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 BRAT1Q6PJG6 821 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 PPP1R21Q6ZMI0 780 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 MAMSTRQ6ZN01 415 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 LINC00523Q86TU6 105 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 TTC7BQ86TV6 843 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 HDDC3Q8N4P3 179 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 BBOF1Q8ND07 529 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 LPCAT1Q8NF37 534 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 HCAR2Q8TDS4 363 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 GANCQ8TET4 914 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 PIH1D2Q8WWB5 315 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 RMDN1Q96DB5 314 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ECHDC3Q96DC8 303 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 TRIB3Q96RU7 358 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ADGRE3Q9BY15 652 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 PABPC3Q9H361 631 aaKnown RBP12.33□□□□□ -0.44
SDC1-206ENST00000482879 EPB41L5Q9HCM4 733 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 EIF2B3Q9NR50 452 aaKnown RBP12.33□□□□□ -0.44
SDC1-206ENST00000482879 WHRNQ9P202 907 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 ANAPC5Q9UJX4 755 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 PHTF1Q9UMS5 762 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 TRPM6Q9BX84 2022 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 DOCK9Q9BZ29 2069 aa12.33□□□□□ -0.44
SDC1-206ENST00000482879 A0A1W2PP55 124 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 TSPAN11A1L157 253 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 PLK4O00444 970 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 NDC80O14777 642 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 SUN1O94901 812 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 SEC31AO94979 1220 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 CPP00450 1065 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 HLA-DPA1P20036 260 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 CHRNA4P43681 627 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 ITGA8P53708 1063 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 DRG2P55039 364 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 RPL26P61254 145 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 SARNPP82979 210 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 CCDC15Q0P6D6 951 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 CNTN1Q12860 1018 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 SFSWAPQ12872 951 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 CALCOCO2Q13137 446 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 GALNT3Q14435 633 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 TRADDQ15628 312 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 SLC1A5Q15758 541 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 QPCTQ16769 361 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 TTC31Q49AM3 519 aaPredicted RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 SIRPB2Q5JXA9 342 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 FBXL19Q6PCT2 694 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms