RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 CCNG2Q16589 344 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 LONRF2Q1L5Z9 754 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 WDR45BQ5MNZ6 344 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 SYCP2LQ5T4T6 812 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 PEAR1Q5VY43 1037 aaPredicted RBP19.9■□□□□ 0.78
LIME1-205ENST00000480139 DRICH1Q6PGQ1 229 aaPredicted RBP19.9■□□□□ 0.78
LIME1-205ENST00000480139 TTC7BQ86TV6 843 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 ZSWIM9Q86XI8 627 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 C17orf53Q8N3J3 647 aaPredicted RBP19.9■□□□□ 0.78
LIME1-205ENST00000480139 DNASE2BQ8WZ79 361 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 TRIM44Q96DX7 344 aaPredicted RBP19.9■□□□□ 0.78
LIME1-205ENST00000480139 TDRD1Q9BXT4 1180 aaKnown RBP19.9■□□□□ 0.78
LIME1-205ENST00000480139 HOMER3Q9NSC5 361 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 PCDHGC4Q9Y5F7 938 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 RAI2Q9Y5P3 530 aa19.9■□□□□ 0.78
LIME1-205ENST00000480139 TBC1D3DA0A087WVF3 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3IA0A087WXS9 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3EA0A087X179 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3KA0A087X1G2 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 CTAGE9A4FU28 777 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3FA6NER0 549 aaPredicted RBP19.89■□□□□ 0.77
LIME1-205ENST00000480139 C5orf60A6NFR6 353 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3LB9A6J9 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 SPINT1O43278 529 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 LATO43561 262 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 OPHN1O60890 802 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 PGLSO95336 258 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 IGHV4-34P06331 123 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3HP0C7X1 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 NUDT1P36639 197 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 CD86P42081 329 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 RPL26P61254 145 aaKnown RBP19.89■□□□□ 0.77
LIME1-205ENST00000480139 LPAL2Q16609 132 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 ARMC12Q5T9G4 340 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3GQ6DHY5 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 ITPRIPL1Q6GPH6 555 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3CQ6IPX1 549 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 KIAA1161Q6NSJ0 714 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 PID1Q7Z2X4 250 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 ADAT2Q7Z6V5 191 aaKnown RBP19.89■□□□□ 0.77
LIME1-205ENST00000480139 PRPF39Q86UA1 669 aaKnown RBP19.89■□□□□ 0.77
LIME1-205ENST00000480139 TBC1D3Q8IZP1 549 aaPredicted RBP19.89■□□□□ 0.77
LIME1-205ENST00000480139 ACTRT1Q8TDG2 376 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 ATG4AQ8WYN0 398 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 BIRC7Q96CA5 298 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 RTP4Q96DX8 246 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 SPATA13Q96N96 652 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 FCRL5Q96RD9 977 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 PHOX2BQ99453 314 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 C10orf88Q9H8K7 445 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 RPL26L1Q9UNX3 145 aaKnown RBP19.89■□□□□ 0.77
LIME1-205ENST00000480139 USP34Q70CQ2 3546 aa19.89■□□□□ 0.77
LIME1-205ENST00000480139 PRR23AA6NEV1 266 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 FAM47DPA6NHR8 397 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 MEI4A8MW99 385 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 PGRMC1O00264 195 aaKnown RBP19.88■□□□□ 0.77
LIME1-205ENST00000480139 CPP00450 1065 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 ITGAVP06756 1048 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 NFKB1P19838 968 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 XPAP23025 273 aaPredicted RBP19.88■□□□□ 0.77
LIME1-205ENST00000480139 NFKBIAP25963 317 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 STIP1P31948 543 aaKnown RBP19.88■□□□□ 0.77
LIME1-205ENST00000480139 ANKRD20A2Q5SQ80 823 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 ANKRD20A1Q5TYW2 823 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 ANKRD20A3Q5VUR7 823 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 ERAP2Q6P179 960 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 CYP2U1Q7Z449 544 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 COG1Q8WTW3 980 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 C1orf54Q8WWF1 131 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 GBA3Q9H227 469 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 VPS45Q9NRW7 570 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 GMEB2Q9UKD1 530 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 PHTF1Q9UMS5 762 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 PPIL1Q9Y3C6 166 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 PCDHB9Q9Y5E1 797 aa19.88■□□□□ 0.77
LIME1-205ENST00000480139 RIOK3O14730 519 aaKnown RBP19.87■□□□□ 0.77
LIME1-205ENST00000480139 RNGTTO60942 597 aaKnown RBP19.87■□□□□ 0.77
LIME1-205ENST00000480139 GCATO75600 419 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 FSBPO95073 299 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 MMP12P39900 470 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 ETF1P62495 437 aaKnown RBP19.87■□□□□ 0.77
LIME1-205ENST00000480139 PPP2CBP62714 309 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 RPS21P63220 83 aaKnown RBP19.87■□□□□ 0.77
LIME1-205ENST00000480139 PPP2CAP67775 309 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 TMEM52BQ4KMG9 183 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 TMEM259Q4ZIN3 620 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 ARMCX6Q7L4S7 300 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 HORMAD1Q86X24 394 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 SYT12Q8IV01 421 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.87■□□□□ 0.77
LIME1-205ENST00000480139 DEFB119Q8N690 84 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 PAF1Q8N7H5 531 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 PDCD6IPQ8WUM4 868 aaKnown RBP19.87■□□□□ 0.77
LIME1-205ENST00000480139 PIH1D2Q8WWB5 315 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 FEM1CQ96JP0 617 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 PPP1R2P1Q96PQ5 205 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 RBM15Q96T37 977 aaKnown RBP eCLIP19.87■□□□□ 0.77
LIME1-205ENST00000480139 TMEM121Q9BTD3 319 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 PCDH12Q9NPG4 1184 aa19.87■□□□□ 0.77
LIME1-205ENST00000480139 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms