RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 LIN7AO14910 233 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 HOXC11O43248 304 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 DAPK3O43293 454 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 DCXO43602 365 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 BUB1O43683 1085 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 NARSO43776 548 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 TSPAN3O60637 253 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 SHOX2O60902 331 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 TBL1XO60907 577 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 LRCH4O75427 683 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ERLIN1O75477 346 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MOCS3O95396 460 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 KLKB1P03952 638 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 CYP17A1P05093 508 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ARSAP15289 507 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MIPP30301 263 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ADRA1BP35368 520 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ARL4AP40617 200 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 CETN2P41208 172 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 EIF2DP41214 584 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 GRIA2P42262 883 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MNAT1P51948 309 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ATXN1P54253 815 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ZXDBP98169 803 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 OGDHQ02218 1023 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 SCAPQ12770 1279 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 TMED1Q13445 227 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 BIRC2Q13490 618 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 EIF4EBP2Q13542 120 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 CDH18Q13634 790 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 KRT81Q14533 505 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MLF2Q15773 248 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MLANAQ16655 118 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 SLC44A4Q53GD3 710 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 HSP90B2PQ58FF3 399 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MS4A13Q5J8X5 152 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 FAM209AQ5JX71 171 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 LY6G5CQ5SRR4 150 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MPP7Q5T2T1 576 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ERMARDQ5T6L9 678 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 OTUD1Q5VV17 481 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 C11orf63Q6NUN7 778 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 RWDD4Q6NW29 188 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 FAM214BQ7L5A3 538 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 BNIPLQ7Z465 357 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 TMC3Q7Z5M5 1100 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 RALGPS2Q86X27 583 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MAP7D3Q8IWC1 876 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 RHOT1Q8IXI2 618 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 FAM217AQ8IXS0 508 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ADGRG2Q8IZP9 1017 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 SYNPOQ8N3V7 929 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 CEP112Q8N8E3 955 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 DTWD2Q8NBA8 298 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 DRAXINQ8NBI3 349 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 TEKT4Q8WW24 435 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 TBC1D31Q96DN5 1066 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 RCC1LQ96I51 464 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 COX4I2Q96KJ9 171 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MRGPRX3Q96LB0 322 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 C1orf74Q96LT6 269 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 LRRC3BQ96PB8 259 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 RPP25Q9BUL9 199 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 SLC2A11Q9BYW1 496 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MFSD1Q9H3U5 465 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 DHX35Q9H5Z1 703 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 RETREG1Q9H6L5 497 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 NOL6Q9H6R4 1146 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 CATSPERBQ9H7T0 1116 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ZWILCHQ9H900 591 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 ARHGEF3Q9NR81 526 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 DDX56Q9NY93 547 aaKnown RBP6.33□□□□□ -1.4
SF3B1-209ENST00000479532 GTSE1Q9NYZ3 720 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 WNT16Q9UBV4 365 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 OR12D3Q9UGF7 316 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 PCSK1NQ9UHG2 260 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 VANGL2Q9ULK5 521 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 FZD10Q9ULW2 581 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 CA14Q9ULX7 337 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 GUCA1BQ9UMX6 200 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 PPP2R2CQ9Y2T4 447 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 EMC9Q9Y3B6 208 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 HS3ST4Q9Y661 456 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 PIAS3Q9Y6X2 628 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 MYO10Q9HD67 2058 aa6.33□□□□□ -1.4
SF3B1-209ENST00000479532 TRBV23-1A0A0A0MS06 115 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-209ENST00000479532 GOLGA6L7A0A1B0GV03 622 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 A0A1B0GVM2 712 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 TCAF2A6NFQ2 919 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 PRR33A8MZF0 331 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 E9PAM4 449 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 SPECC1L-ADORA2AF8WAN1 911 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 EEF2KO00418 725 aaKnown RBP6.32□□□□□ -1.4
SF3B1-209ENST00000479532 NCAM2O15394 837 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 FGF10O15520 208 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-209ENST00000479532 PSTPIP1O43586 416 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 CREB3O43889 395 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 SRGAP2O75044 1071 aa6.32□□□□□ -1.4
SF3B1-209ENST00000479532 PPFIA2O75334 1257 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms