RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 HAPLN3Q96S86 360 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 GATA5Q9BWX5 397 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 USP29Q9HBJ7 922 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 TAS2R1Q9NYW7 299 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 IGSF6O95976 241 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 KRT6AP02538 564 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 KRT6BP04259 564 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 SLC2A4P14672 509 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ITGB6P18564 788 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 KRT6CP48668 564 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 MPP1Q00013 466 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ARL13AQ5H913 290 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ZNF618Q5T7W0 954 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 SZRD1Q7Z422 152 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 TMPRSS4Q9NRS4 437 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 PACSIN3Q9UKS6 424 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 SLX4Q8IY92 1834 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 SPTLC1O15269 473 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 TNFAIP8O95379 198 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 GUCA1CO95843 209 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 PIRTP0C851 137 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 HNRNPDQ14103 355 aaKnown RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 GALNT3Q14435 633 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 PTPRNQ16849 979 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 OLFML2BQ68BL8 750 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 C16orf87Q6PH81 154 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 HFE2Q6ZVN8 426 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 CLYBLQ8N0X4 340 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 TMEM79Q9BSE2 394 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 SPAG4Q9NPE6 437 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 IRAK2O43187 625 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 PABPC1LQ4VXU2 614 aaKnown RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 VWA5B1Q5TIE3 1220 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 HECTD2Q5U5R9 776 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ESRP1Q6NXG1 681 aaKnown RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 CUZD1Q86UP6 607 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 EFCAB3Q8N7B9 438 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 AZIN2Q96A70 460 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 YME1L1Q96TA2 773 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 C2orf49Q9BVC5 232 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 EPB41L4BQ9H329 900 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ELOVL6Q9H5J4 265 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 C6orf203Q9P0P8 240 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 GTF2IRD1Q9UHL9 959 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 MTF2Q9Y483 593 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 XIRP1Q702N8 1843 aaKnown RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 SAC3D1A6NKF1 404 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 KCNU1A8MYU2 1149 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 MYO1GB0I1T2 1018 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 KATNA1O75449 491 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 IPO13O94829 963 aaKnown RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 PRDX6P30041 224 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 NDST2P52849 883 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 MILR1Q7Z6M3 343 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 TTC7BQ86TV6 843 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 NSMCE2Q96MF7 247 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 FCRL5Q96RD9 977 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 FAM192AQ9GZU8 254 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 OSBPL2Q9H1P3 480 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 AP4S1Q9Y587 144 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 DNAJC25-GNG10A0A024R161 153 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 TTC36A6NLP5 189 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 H3BMM5 538 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 CNMDO75829 334 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 MLYCDO95822 493 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 LPOP22079 712 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 IFNA8P32881 189 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 IDH3AP50213 366 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 CENPLQ8N0S6 344 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 DIS3LQ8TF46 1054 aaKnown RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 CLPTM1LQ96KA5 538 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 INPP4BO15327 924 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 USP41Q3LFD5 358 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 KHDC1Q4VXA5 237 aaKnown RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 FAM182AQ5T1J6 154 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 CAND1Q86VP6 1230 aaKnown RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 UNC5BQ8IZJ1 945 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 RAB42Q8N4Z0 105 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 ZNF781Q8N8C0 355 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 MIEF2Q96C03 454 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 DPY30Q9C005 99 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 AGO1Q9UL18 857 aaKnown RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 TRAF6Q9Y4K3 522 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 EDN1P05305 212 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 BTG3Q14201 252 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 MAMDC4Q6UXC1 1216 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 TIFABQ6ZNK6 161 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 OSCP1Q8WVF1 389 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 HIC2Q96JB3 615 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 NR1H4Q96RI1 486 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-220ENST00000477528 SLC39A8Q9C0K1 460 aa14.72□□□□□ -0.05
HDAC6-220ENST00000477528 COL4A1P02462 1669 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 AZIN1O14977 448 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 SYN3O14994 580 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 ABL2P42684 1182 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 XIAPP98170 497 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 FAM126BQ8IXS8 530 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 S100A14Q9HCY8 104 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 SLC17A6Q9P2U8 582 aa14.71□□□□□ -0.05
HDAC6-220ENST00000477528 CDH22Q9UJ99 828 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms