RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 VPS36Q86VN1 386 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SPACA3Q8IXA5 215 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SLC35F3Q8IY50 421 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RBFAQ8N0V3 343 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LSMEM2Q8N112 164 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TPCN2Q8NHX9 752 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EPAS1Q99814 870 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LRRC61Q9BV99 259 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SUV39H2Q9H5I1 410 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CATSPERBQ9H7T0 1116 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 POLR1BQ9H9Y6 1135 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SPASTQ9UBP0 616 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 IPO11Q9UI26 975 aaKnown RBP12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EIF3CLB5ME19 914 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 J3KR12 359 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 YY2O15391 372 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TEX33O43247 280 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CREB3O43889 395 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 C1QL1O75973 258 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ATP1A3P13637 1013 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 FERP16591 822 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GRM3Q14832 879 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CDKN3Q16667 212 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PRRT3Q5FWE3 981 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PERM1Q5SV97 790 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 C6orf132Q5T0Z8 1188 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SCYL2Q6P3W7 929 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ZSWIM9Q86XI8 627 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DNAAF5Q86Y56 855 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ARHGAP12Q8IWW6 846 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PHACTR4Q8IZ21 702 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MAPK15Q8TD08 544 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LMX1AQ8TE12 382 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SNRNP27Q8WVK2 155 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ECHDC3Q96DC8 303 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NSMCE3Q96MG7 304 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ZNF641Q96N77 438 aaPredicted RBP12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SLC46A1Q96NT5 459 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EIF3CQ99613 913 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 IL12RB2Q99665 862 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SLC39A8Q9C0K1 460 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EVA1BQ9NVM1 165 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 APOBEC3BQ9UH17 382 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ENTPD2Q9Y5L3 495 aa12.37□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SCN8AQ9UQD0 1980 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CFAP69A5D8W1 941 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TMEM191CA6NGB0 347 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TMEM110-MUSTN1A8MSY1 372 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NTN3O00634 580 aaPredicted RBP12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CASC3O15234 703 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TCEA3O75764 348 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PIGNO95427 931 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TSHRP16473 764 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MMP12P39900 470 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RGRP47804 291 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 HK3P52790 923 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 THOP1P52888 689 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PDX1P52945 283 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ADKP55263 362 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GABREP78334 506 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ELP6Q0PNE2 266 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CCDC173Q0VFZ6 552 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 C1orf61Q13536 156 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 IRF4Q15306 451 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NR0B2Q15466 257 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 STX1AQ16623 288 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CA9Q16790 459 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 BRAT1Q6PJG6 821 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LVRNQ6Q4G3 990 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SASS6Q6UVJ0 657 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EFL1Q7Z2Z2 1120 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SDR16C5Q8N3Y7 309 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ZNF248Q8NDW4 579 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ANKRD20A12PQ8NF67 263 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CXorf40AQ8TE69 158 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 FNIP1Q8TF40 1166 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SPOCK2Q92563 424 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GBP4Q96PP9 640 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TUBGCP5Q96RT8 1024 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PEBP4Q96S96 227 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 C1QTNF7Q9BXJ2 289 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ABCG4Q9H172 646 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PCDH12Q9NPG4 1184 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RTN4Q9NQC3 1192 aaKnown RBP12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DONSONQ9NYP3 566 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 AIPL1Q9NZN9 384 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 UBA2Q9UBT2 640 aaPredicted RBP12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 COQ6Q9Y2Z9 468 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PCDHGA8Q9Y5G5 932 aa12.36□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ZNF462Q96JM2 2506 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TEX51A0A1B0GUA7 166 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CPED1A4D0V7 1026 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ANKRD62A6NC57 917 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CDRT15L2A8MXV6 281 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GOLGA6L22H0YM25 854 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TRAFD1O14545 582 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CELA2BP08218 269 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CCDC172P0C7W6 258 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GZMAP12544 262 aa12.35□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 C6P13671 934 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms