RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 UGP2Q16851 508 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 VPS36Q86VN1 386 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 CAMK1DQ8IU85 385 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 CACTIN-AS1Q8N1I8 211 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 FAM181AQ8N9Y4 354 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 TRIM11Q96F44 468 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 APOLD1Q96LR9 279 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 THAP2Q9H0W7 228 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 TCEAL2Q9H3H9 227 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-209ENST00000474432 MRPL47Q9HD33 250 aaKnown RBP18.75■□□□□ 0.59
COL7A1-209ENST00000474432 PCDH12Q9NPG4 1184 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 DONSONQ9NYP3 566 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 CAPN11Q9UMQ6 739 aa18.75■□□□□ 0.59
COL7A1-209ENST00000474432 LRP4O75096 1905 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 RIOK3O14730 519 aaKnown RBP18.74■□□□□ 0.59
COL7A1-209ENST00000474432 TM7SF2O76062 418 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 GYPCP04921 128 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 SUOXP51687 545 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 ZBED6P86452 979 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 SEMG2Q02383 582 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 IL10RBQ08334 325 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 ACAP1Q15027 740 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 WSCD2Q2TBF2 565 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 SRLQ86TD4 932 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 RBFAQ8N0V3 343 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 CXorf40AQ8TE69 158 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 ECHDC3Q96DC8 303 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 BTBD6Q96KE9 485 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 ZNF641Q96N77 438 aaPredicted RBP18.74■□□□□ 0.59
COL7A1-209ENST00000474432 IPO11Q9UI26 975 aaKnown RBP18.74■□□□□ 0.59
COL7A1-209ENST00000474432 COQ6Q9Y2Z9 468 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 BZW2Q9Y6E2 419 aaKnown RBP18.74■□□□□ 0.59
COL7A1-209ENST00000474432 CSNK1G3Q9Y6M4 447 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 NBEAQ8NFP9 2946 aa18.74■□□□□ 0.59
COL7A1-209ENST00000474432 DFFAO00273 331 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 DAPK3O43293 454 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 PALMO75781 387 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 PRKCGP05129 697 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 SERPING1P05155 500 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 RARAP10276 462 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 JUNDP17535 347 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 AMPD1P23109 780 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 MMP12P39900 470 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 ZNF135P52742 658 aaPredicted RBP18.73■□□□□ 0.59
COL7A1-209ENST00000474432 SLC25A11Q02978 314 aaKnown RBP18.73■□□□□ 0.59
COL7A1-209ENST00000474432 GRM3Q14832 879 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 AGERQ15109 404 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 IRF4Q15306 451 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 SMTNL2Q2TAL5 461 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 TDRD12Q587J7 1177 aaKnown RBP18.73■□□□□ 0.59
COL7A1-209ENST00000474432 NYAP1Q6ZVC0 841 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 POLNQ7Z5Q5 900 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 NIPA2Q8N8Q9 360 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 DCBLD1Q8N8Z6 715 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 CPLX3Q8WVH0 158 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 TUBGCP5Q96RT8 1024 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 NCAPGQ9BPX3 1015 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 CACNA1GO43497 2377 aa18.73■□□□□ 0.59
COL7A1-209ENST00000474432 TRAFD1O14545 582 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-209ENST00000474432 AQP9O43315 295 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 GCATO75600 419 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 CYP1A2P05177 515 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 C6P13671 934 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 HNF1BP35680 557 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 YPEL5P62699 121 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 DAB2P98082 770 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 NSUN2Q08J23 767 aaKnown RBP eCLIP18.72■□□□□ 0.59
COL7A1-209ENST00000474432 SLC10A7Q0GE19 358 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 ELP6Q0PNE2 266 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 RALGDSQ12967 914 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 RTP5Q14D33 572 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 BOLA3Q53S33 107 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 CDCP2Q5VXM1 449 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 BRAT1Q6PJG6 821 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 C19orf48Q6RUI8 117 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 CPNE8Q86YQ8 564 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 CSPG4P5Q96PW8 444 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 PSKH2Q96QS6 385 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.72■□□□□ 0.59
COL7A1-209ENST00000474432 IFNKQ9P0W0 207 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 LHX6Q9UPM6 363 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 RP1P56715 2156 aa18.72■□□□□ 0.59
COL7A1-209ENST00000474432 TTC24A2A3L6 582 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-209ENST00000474432 NEMP2A6NFY4 417 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 GM2AP17900 193 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 CR2P20023 1033 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 IL4RP24394 825 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 EIF4A3P38919 411 aaKnown RBP18.71■□□□□ 0.59
COL7A1-209ENST00000474432 E2F1Q01094 437 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 PIGHQ14442 188 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-209ENST00000474432 RFTN1Q14699 578 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-209ENST00000474432 PGBD5Q8N414 524 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 LZTR1Q8N653 840 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 NRSN2Q9GZP1 204 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 CLPBQ9H078 707 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 ZWILCHQ9H900 591 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 SP110Q9HB58 689 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 PCDH18Q9HCL0 1135 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.71■□□□□ 0.59
COL7A1-209ENST00000474432 CLCA2Q9UQC9 943 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms