RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	ASPM	Q8IZT6	3477 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	FAM208B	Q5VWN6	2430 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	LRRD1	A4D1F6	860 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	FFAR2	O15552	330 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	TNFSF14	O43557	240 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	SPOP	O43791	374 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	ALPPL2	P10696	532 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	EPHA8	P29322	1005 aa	Predicted RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	CYLC1	P35663	651 aa	Predicted RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	RABIF	P47224	123 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	POLR2L	P62875	67 aa	Known RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	DAB2	P98082	770 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	SLC25A11	Q02978	314 aa	Known RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	BNIP3	Q12983	259 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	MMRN1	Q13201	1228 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	PDE1C	Q14123	709 aa	Predicted RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	PDK2	Q15119	407 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	SPA17	Q15506	151 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	TXNRD3NB	Q6F5E7	133 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	BRAT1	Q6PJG6	821 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373		Q6ZSR6	202 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	DCP2	Q8IU60	420 aa	Known RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	CAMK1D	Q8IU85	385 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	ARHGAP12	Q8IWW6	846 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	SLC35G2	Q8TBE7	412 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	ZNF641	Q96N77	438 aa	Predicted RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	ERVMER34-1	Q9H9K5	563 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	PDF	Q9HBH1	243 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	RCOR3	Q9P2K3	495 aa	Predicted RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	DKK3	Q9UBP4	350 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	COQ6	Q9Y2Z9	468 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	HS3ST3A1	Q9Y663	406 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	COL5A1	P20908	1838 aa	Predicted RBP	11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	IGF2R	P11717	2491 aa		11.64	□□□□□ -0.55
CPNE1-222	ENST00000473373	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	GOLGA6C	A6NDK9	693 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	GOLGA6B	A6NDN3	693 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	ENC1	O14682	589 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	MAP3K6	O95382	1288 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	KRT1	P04264	644 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	GOLGA6D	P0CG33	693 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	HSPA9	P38646	679 aa	Known RBP	11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	MMP13	P45452	471 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	SUOX	P51687	545 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	NAP1L1	P55209	391 aa	Known RBP	11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	AP1S1	P61966	158 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	PTK2B	Q14289	1009 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	UGP2	Q16851	508 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	TMEM259	Q4ZIN3	620 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	ZNF542P	Q5EBM4	170 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	MARC1	Q5VT66	337 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	DENND2C	Q68D51	928 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	TIGD7	Q6NT04	549 aa	Predicted RBP	11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	SARM1	Q6SZW1	724 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	KYAT3	Q6YP21	454 aa	Known RBP	11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	GCNT7	Q6ZNI0	430 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	SPATS2	Q86XZ4	545 aa	Known RBP	11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	TMEM145	Q8NBT3	493 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	CCNY	Q8ND76	341 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	DENND6B	Q8NEG7	585 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	RFFL	Q8WZ73	363 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	ZNF599	Q96NL3	588 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	NT5M	Q9NPB1	228 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	PCDH12	Q9NPG4	1184 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	ETNK2	Q9NVF9	386 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	EVA1B	Q9NVM1	165 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	GOLGA6A	Q9NYA3	693 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	DOLK	Q9UPQ8	538 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	MSRB2	Q9Y3D2	182 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	NEUROG3	Q9Y4Z2	214 aa		11.63	□□□□□ -0.55
CPNE1-222	ENST00000473373	POM121B	A6NF01	834 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	NEMP2	A6NFY4	417 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373		A8MX80	341 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	GOLGA6L6	A8MZA4	724 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	MFSD11	O43934	449 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	PRKCG	P05129	697 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	PCCB	P05166	539 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	CD48	P09326	243 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	ATXN1L	P0C7T5	689 aa	Known RBP	11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	ELFN1	P0C7U0	828 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	KRT10	P13645	584 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	TIMP2	P16035	220 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	ITIH2	P19823	946 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	RGR	P47804	291 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	CSNK1D	P48730	415 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	EPHB1	P54762	984 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	MAX	P61244	160 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	HNRNPK	P61978	463 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	SEMG2	Q02383	582 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	SLC10A7	Q0GE19	358 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	DPYSL3	Q14195	570 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	ATP13A4	Q4VNC1	1196 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	ANKRD20A8P	Q5CZ79	823 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	AFMID	Q63HM1	303 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	PARG	Q86W56	976 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	RFX6	Q8HWS3	928 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	TP53INP2	Q8IXH6	220 aa		11.62	□□□□□ -0.55
CPNE1-222	ENST00000473373	NDUFAF2	Q8N183	169 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms