RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CBWD5Q5RIA9 395 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 USP45Q70EL2 814 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 PIGBQ92521 554 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 AKAP1Q92667 903 aaKnown RBP eCLIP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 STK25O00506 426 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 CABYRO75952 493 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 NPR2P20594 1047 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 DPYSL3Q14195 570 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 TAF13Q15543 124 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 SNAP47Q5SQN1 464 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 PSTKQ8IV42 348 aaKnown RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 TMEM192Q8IY95 271 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 MND1Q9BWT6 205 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 IL1RAPQ9NPH3 570 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 DNAJC28Q9NX36 388 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 DHRS7Q9Y394 339 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 RBAK-RBAKDNI3L0D1 243 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 NKRFO15226 690 aaKnown RBP eCLIP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 PIGNO95427 931 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 SGPL1O95470 568 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 HTR7P34969 479 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 S100A12P80511 92 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ILDR2Q71H61 639 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 TNFAIP8L1Q8WVP5 186 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 MTMR8Q96EF0 704 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 SMAD5Q99717 465 aaKnown RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 POLR1EQ9GZS1 481 aaKnown RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 CRISPLD1Q9H336 500 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 OSGEPQ9NPF4 335 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 GNEQ9Y223 722 aaKnown RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 CYP1A2P05177 515 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ITGA3P26006 1051 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ATG9AQ7Z3C6 839 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 GLT6D1Q7Z4J2 308 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 RXFP2Q8WXD0 754 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 SLC47A1Q96FL8 570 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 CLPTM1LQ96KA5 538 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 FAM84BQ96KN1 310 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 C7orf26Q96N11 449 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ELOVL4Q9GZR5 314 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 NCF1BA6NI72 391 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 NCF1CA8MVU1 366 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 AVILO75366 819 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 COX7A2P14406 83 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 NCF1P14598 390 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 MSR1P21757 451 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 CRHR1P34998 444 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 TTMPQ5BVD1 217 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 FAM131AQ6UXB0 335 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 PACRGLQ8N7B6 248 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ZSCAN18Q8TBC5 510 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 NACC2Q96BF6 587 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 PARK7Q99497 189 aaKnown RBP13.39□□□□□ -0.27
COL6A3-209ENST00000472056 ZFYVE28Q9HCC9 887 aa13.39□□□□□ -0.27
COL6A3-209ENST00000472056 MNDAP41218 407 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 KCNJ2P63252 427 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 HYIQ5T013 277 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 POU5F2Q8N7G0 328 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 TOP1MTQ969P6 601 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 VMP1Q96GC9 406 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ADGRB2O60241 1585 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ADRA1DP25100 572 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ALDH7A1P49419 539 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 CCNIQ14094 377 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 PERM1Q5SV97 790 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 QSOX2Q6ZRP7 698 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 THRSPQ92748 146 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 MKL1Q969V6 931 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ZDHHC15Q96MV8 337 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SCGB3A2Q96PL1 93 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 RBM22Q9NW64 420 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 DIDO1Q9BTC0 2240 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 WDR27A2RRH5 827 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 IFNA6P05013 189 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 PAMR1Q6UXH9 720 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SYT12Q8IV01 421 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SLITRK4Q8IW52 837 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SLC44A5Q8NCS7 719 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 ZNF248Q8NDW4 579 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 DNERQ8NFT8 737 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SEPT5Q99719 369 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 LMO7Q8WWI1 1683 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 AP5Z1O43299 807 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 DNAJB5O75953 348 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 SCGNO76038 276 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 YES1P07947 543 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 HMBSP08397 361 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 DCKP27707 260 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 CLK3P49761 638 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 MTAPQ13126 283 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 AUHQ13825 339 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 IL18Q14116 193 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 C11orf96Q7Z7L8 435 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 LHFPL3Q86UP9 236 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 FAM20CQ8IXL6 584 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 IPCEF1Q8WWN9 437 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 NXF3Q9H4D5 531 aaKnown RBP13.38□□□□□ -0.27
COL6A3-209ENST00000472056 NT5MQ9NPB1 228 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 PCP4L1A6NKN8 68 aa13.38□□□□□ -0.27
COL6A3-209ENST00000472056 BCKDKO14874 412 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms