RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PSMD12O00232 456 aaPredicted RBP5.4□□□□□ -1.55
SYNE1-220ENST00000471834 FYNP06241 537 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 ODC1P11926 461 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 CAP2P40123 477 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 TMPRSS15P98073 1019 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 CDC26Q8NHZ8 85 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 GRIN3AQ8TCU5 1115 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 DTX3LQ8TDB6 740 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 ACE2Q9BYF1 805 aaPredicted RBP5.4□□□□□ -1.55
SYNE1-220ENST00000471834 ANAPC2Q9UJX6 822 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 CHMP2BQ9UQN3 213 aa5.4□□□□□ -1.55
SYNE1-220ENST00000471834 A0A1W2PPW3 197 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MPOP05164 745 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MTHFD2P13995 350 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CYP2B6P20813 491 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CRHBPP24387 322 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SLC35A2P78381 396 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 BASP1P80723 227 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 KIF19Q2TAC6 998 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 BBS9Q3SYG4 887 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 N4BP2L1Q5TBK1 243 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CENPSQ8N2Z9 138 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 PARP8Q8N3A8 854 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 OR13J1Q8NGT2 312 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 TTC1Q99614 292 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 HEMGNQ9BXL5 484 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ELOVL4Q9GZR5 314 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 NSMCE4AQ9NXX6 385 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ANGPTL3Q9Y5C1 460 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 COL4A5P29400 1685 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 TMEM265A0A087WTH1 108 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MTSS1O43312 755 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 NR3C2P08235 984 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ENO2P09104 434 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 RYKP34925 604 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 GZMMP51124 257 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CHI3L2Q15782 390 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 GRTP1Q5TC63 336 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 NCBP2-AS2Q69YL0 99 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ASPGQ86U10 573 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MAGED4Q96JG8 741 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 HOXD1Q9GZZ0 328 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 TRIT1Q9H3H1 467 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SMYD3Q9H7B4 428 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ATP13A3Q9H7F0 1226 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SLC9A2Q9UBY0 812 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 DSEQ9UL01 958 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 NCAM2O15394 837 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 AP2A1O95782 977 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SEMG1P04279 462 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MMP10P09238 476 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CRKP46108 304 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SLC26A2P50443 739 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 PSME3P61289 254 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 RCAN2Q14206 197 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MAP7D3Q8IWC1 876 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CADM3Q8N126 398 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SFRP1Q8N474 314 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 C1orf127Q8N9H9 656 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ANGPTL6Q8NI99 470 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ABTB1Q969K4 478 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MUL1Q969V5 352 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 REXO5Q96IC2 774 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ASB2Q96Q27 587 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MRPL1Q9BYD6 325 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ACAD9Q9H845 621 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 WDR6Q9NNW5 1121 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SRP68Q9UHB9 627 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 STAP1Q9ULZ2 295 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 RNF215Q9Y6U7 377 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 RAD17O75943 681 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ALPLP05186 524 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 TGFB3P10600 412 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 FCGR1AP12314 374 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 HTR1EP28566 365 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 TFAMQ00059 246 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MERTKQ12866 999 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 GK3PQ14409 553 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CCNYL2Q5T2Q4 361 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MROH9Q5TGP6 573 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 DCP2Q8IU60 420 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 ICA1LQ8NDH6 482 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SPATA18Q8TC71 538 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 CERS2Q96G23 380 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 NUSAP1Q9BXS6 441 aaKnown RBP5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MUC3BQ9H195 1237 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 PCDHGA11Q9Y5H2 935 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 BTAF1O14981 1849 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 WASH4PA8MWX3 477 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MCF2LO15068 1137 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 SLC16A4O15374 487 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 IDH3BO43837 385 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 PGLSO95336 258 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 LGI1O95970 557 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 C21orf58P58505 322 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 C5orf22Q49AR2 442 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 KIAA2013Q8IYS2 634 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 DSELQ8IZU8 1212 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 IL17RCQ8NAC3 791 aa5.39□□□□□ -1.55
SYNE1-220ENST00000471834 MASTLQ96GX5 879 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms