RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 HS1BP3Q53T59 392 aa16.47■□□□□ 0.23
COL9A3-208ENST00000469802 VPS36Q86VN1 386 aa16.47■□□□□ 0.23
COL9A3-208ENST00000469802 ZSWIM9Q86XI8 627 aa16.47■□□□□ 0.23
COL9A3-208ENST00000469802 ZNF641Q96N77 438 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-208ENST00000469802 TUBGCP5Q96RT8 1024 aa16.47■□□□□ 0.23
COL9A3-208ENST00000469802 C1QTNF7Q9BXJ2 289 aa16.47■□□□□ 0.23
COL9A3-208ENST00000469802 PNMA8BQ9ULN7 279 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-208ENST00000469802 CLCA2Q9UQC9 943 aa16.47■□□□□ 0.23
COL9A3-208ENST00000469802 TOR1BO14657 336 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 AQP9O43315 295 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 BUB1BO60566 1050 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-208ENST00000469802 SERPINC1P01008 464 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 SKILP12757 684 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 PCK1P35558 622 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 MMP12P39900 470 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 AGERQ15109 404 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 IRF4Q15306 451 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 UGP2Q16851 508 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 KLHL40Q2TBA0 621 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 PPP6R3Q5H9R7 873 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-208ENST00000469802 CDCP2Q5VXM1 449 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 ZCCHC8Q6NZY4 707 aaKnown RBP16.46■□□□□ 0.23
COL9A3-208ENST00000469802 BRAT1Q6PJG6 821 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 MACC1Q6ZN28 852 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 CXorf40AQ8TE69 158 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 ECHDC3Q96DC8 303 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 TBATAQ96M53 351 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 NCAPGQ9BPX3 1015 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 WRAP53Q9BUR4 548 aaKnown RBP16.46■□□□□ 0.23
COL9A3-208ENST00000469802 SUV39H2Q9H5I1 410 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 CBX8Q9HC52 389 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 PCDH12Q9NPG4 1184 aa16.46■□□□□ 0.23
COL9A3-208ENST00000469802 MBNL1Q9NR56 388 aaKnown RBP16.46■□□□□ 0.23
COL9A3-208ENST00000469802 CWC15Q9P013 229 aaKnown RBP16.46■□□□□ 0.23
COL9A3-208ENST00000469802 LOC400499M0QZD8 3231 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 SYCE3A1L190 88 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 RIOK3O14730 519 aaKnown RBP16.45■□□□□ 0.22
COL9A3-208ENST00000469802 LZTS3O60299 673 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-208ENST00000469802 JUNDP17535 347 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 IL1R2P27930 398 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 THOP1P52888 689 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 PTK2BQ14289 1009 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 ACAP1Q15027 740 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 DPYSL2Q16555 572 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 COL28A1Q2UY09 1125 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 C19orf48Q6RUI8 117 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 ARHGAP36Q6ZRI8 547 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 LUZP1Q86V48 1076 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 RBFAQ8N0V3 343 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 TSEN2Q8NCE0 465 aaKnown RBP16.45■□□□□ 0.22
COL9A3-208ENST00000469802 SYN2Q92777 582 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-208ENST00000469802 LRRC61Q9BV99 259 aa16.45■□□□□ 0.22
COL9A3-208ENST00000469802 MRPL47Q9HD33 250 aaKnown RBP16.45■□□□□ 0.22
COL9A3-208ENST00000469802 IPO11Q9UI26 975 aaKnown RBP16.45■□□□□ 0.22
COL9A3-208ENST00000469802 TPP1O14773 563 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 OPA1O60313 960 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 PALMO75781 387 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 MYF5P13349 255 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 C6P13671 934 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 TCF4P15884 667 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 FANCCQ00597 558 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 IL10RBQ08334 325 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 RFTN1Q14699 578 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-208ENST00000469802 WSCD2Q2TBF2 565 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 SRLQ86TD4 932 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 CAMK1DQ8IU85 385 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 TP53INP2Q8IXH6 220 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 PHACTR4Q8IZ21 702 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 NIPA2Q8N8Q9 360 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 BTN2A2Q8WVV5 523 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 SPOCK2Q92563 424 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 TCEAL2Q9H3H9 227 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-208ENST00000469802 SP110Q9HB58 689 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 MYO1AQ9UBC5 1043 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 APOBEC3BQ9UH17 382 aaKnown RBP16.44■□□□□ 0.22
COL9A3-208ENST00000469802 SALL4Q9UJQ4 1053 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 ATP8A1Q9Y2Q0 1164 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 COQ6Q9Y2Z9 468 aa16.44■□□□□ 0.22
COL9A3-208ENST00000469802 DFFAO00273 331 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 MUSKO15146 869 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 DAPK3O43293 454 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 TLX3O43711 291 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 GCATO75600 419 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 MT-CO3P00414 261 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 XPAP23025 273 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 SERPINA4P29622 427 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 EIF4A3P38919 411 aaKnown RBP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 DUSP3P51452 185 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 NSUN2Q08J23 767 aaKnown RBP eCLIP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 RALGDSQ12967 914 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 LRRC14Q15048 493 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 TDRD12Q587J7 1177 aaKnown RBP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 PDZD3Q86UT5 571 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 LZTR1Q8N653 840 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 NSMCE3Q96MG7 304 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 PSKH2Q96QS6 385 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 CINPQ9BW66 212 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-208ENST00000469802 BOCQ9BWV1 1114 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 ATP13A3Q9H7F0 1226 aa16.43■□□□□ 0.22
COL9A3-208ENST00000469802 ZWILCHQ9H900 591 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms