RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 PGS1Q32NB8 556 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 KHDC1Q4VXA5 237 aaKnown RBP7.66□□□□□ -1.18
UBE4B-204ENST00000462658 USP39Q53GS9 565 aaKnown RBP7.66□□□□□ -1.18
UBE4B-204ENST00000462658 CLLU1OSQ5K130 101 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 ATXN7L2Q5T6C5 722 aaPredicted RBP7.66□□□□□ -1.18
UBE4B-204ENST00000462658 PPP1R2P3Q6NXS1 205 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 DCLRE1AQ6PJP8 1040 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 DSTYKQ6XUX3 929 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 TTC7BQ86TV6 843 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 RHOT2Q8IXI1 618 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 MCOLN2Q8IZK6 566 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 TMEM35BQ8NCS4 154 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 OR10H5Q8NGA6 315 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 SLC35G2Q8TBE7 412 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 KBTBD7Q8WVZ9 684 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 RFFLQ8WZ73 363 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 ARHGEF26Q96DR7 871 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 CLIP3Q96DZ5 547 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 SENP8Q96LD8 212 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 CDK5RAP1Q96SZ6 601 aaKnown RBP7.66□□□□□ -1.18
UBE4B-204ENST00000462658 PAAF1Q9BRP4 392 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 ZNF518BQ9C0D4 1074 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 DNAI2Q9GZS0 605 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 CACNG4Q9UBN1 327 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 L1RE1Q9UN81 338 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 TESMINQ9Y4I5 508 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 CEP83Q9Y592 693 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 NCANO14594 1321 aa7.66□□□□□ -1.18
UBE4B-204ENST00000462658 TRIM43BA6NCK2 446 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 LEFTY2O00292 366 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 PALMO75781 387 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 B3GAT3O94766 335 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 DDHD2O94830 711 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 TIMP1P01033 207 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 CYP1A2P05177 515 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 SBK3P0C264 359 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 MYBL1P10243 752 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 LMO2P25791 158 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 CDH5P33151 784 aaPredicted RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 RFC2P35250 354 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 TLE1Q04724 770 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 RNASELQ05823 741 aaKnown RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 ATAT1Q5SQI0 421 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 LIN9Q5TKA1 542 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 WSCD1Q658N2 575 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 DENND1BQ6P3S1 775 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 LCLAT1Q6UWP7 414 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 SEM1Q6ZVN7 128 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 ACOT1Q86TX2 421 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 ZNF280BQ86YH2 543 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 PHF13Q86YI8 300 aaPredicted RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 PLXDC1Q8IUK5 500 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 ADGRF2Q8IZF7 708 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 CRYBG2Q8N1P7 616 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 PDCL2Q8N4E4 241 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 WDTC1Q8N5D0 677 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 C12orf29Q8N999 325 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 C1orf131Q8NDD1 294 aaKnown RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 IL17DQ8TAD2 202 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 TRIM43Q96BQ3 446 aaPredicted RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 ZNF653Q96CK0 615 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 VCPIP1Q96JH7 1222 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 CASD1Q96PB1 797 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 FAM193BQ96PV7 902 aaPredicted RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 C11orf54Q9H0W9 315 aaPredicted RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 LHX5Q9H2C1 402 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 TBC1D13Q9NVG8 400 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 ADAM22Q9P0K1 906 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 CTTNBP2NLQ9P2B4 639 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 CNOT8Q9UFF9 292 aaKnown RBP7.65□□□□□ -1.18
UBE4B-204ENST00000462658 GTF3C4Q9UKN8 822 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 STXBP5LQ9Y2K9 1186 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 JRKLQ9Y4A0 524 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 NME7Q9Y5B8 376 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 PCDHA3Q9Y5H8 950 aa7.65□□□□□ -1.18
UBE4B-204ENST00000462658 TRIP11Q15643 1979 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 GRID2IPA4D2P6 1211 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 M0QYV0 167 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 O00370 1275 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 KIAA0355O15063 1070 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 ATP1A1P05023 1023 aaKnown RBP7.64□□□□□ -1.19
UBE4B-204ENST00000462658 CALB1P05937 261 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 MMP8P22894 467 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 RRM1P23921 792 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 SLC6A2P23975 617 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 ITGB8P26012 769 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 APOBEC3AP31941 199 aaPredicted RBP7.64□□□□□ -1.19
UBE4B-204ENST00000462658 BRCC3P46736 316 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 OR1G1P47890 313 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 LHX1P48742 406 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 AARSP49588 968 aaKnown RBP eCLIP7.64□□□□□ -1.19
UBE4B-204ENST00000462658 MAP2K6P52564 334 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 HADHBP55084 474 aaKnown RBP7.64□□□□□ -1.19
UBE4B-204ENST00000462658 KRTAP10-2P60368 255 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 DSC1Q08554 894 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 PTP4A2Q12974 167 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 TUBB2AQ13885 445 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 RAB39AQ14964 217 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 MLC1Q15049 377 aa7.64□□□□□ -1.19
UBE4B-204ENST00000462658 GOLGA7BQ2TAP0 167 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms