RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 RCOR3Q9P2K3 495 aaPredicted RBP21.43■■□□□ 1.02
HMGB3-205ENST00000455596 SEPT3Q9UH03 358 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 CHD8Q9HCK8 2581 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 SPTY2D1-AS1A0A0U1RR47 76 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 PIAS2O75928 621 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 PFN3P60673 137 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 DNAJC3Q13217 504 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 PDE1CQ14123 709 aaPredicted RBP21.42■■□□□ 1.02
HMGB3-205ENST00000455596 ASTE1Q2TB18 679 aaPredicted RBP21.42■■□□□ 1.02
HMGB3-205ENST00000455596 HS1BP3Q53T59 392 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 ERAP2Q6P179 960 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 SLC25A45Q8N413 288 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 TSC1Q92574 1164 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 PACSIN1Q9BY11 444 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 DNAJC28Q9NX36 388 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 LCMT1Q9UIC8 334 aa21.42■■□□□ 1.02
HMGB3-205ENST00000455596 AKR1B10O60218 316 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 RFPL3O75679 317 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 C1SP09871 688 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 CDK4P11802 303 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 IGFALSP35858 605 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 ACADVLP49748 655 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 SCNN1BP51168 640 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 HNRNPKP61978 463 aaKnown RBP eCLIP21.41■■□□□ 1.02
HMGB3-205ENST00000455596 BCL2L1Q07817 233 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 SLC10A7Q0GE19 358 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 FZD2Q14332 565 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 ZNF235Q14590 738 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 DHRS13Q6UX07 377 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 PARGQ86W56 976 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 ATPAF2Q8N5M1 289 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 PAF1Q8N7H5 531 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 ZCCHC14Q8WYQ9 949 aaKnown RBP21.41■■□□□ 1.02
HMGB3-205ENST00000455596 PSKH2Q96QS6 385 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 PCDH12Q9NPG4 1184 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 UCKL1Q9NWZ5 548 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 ZMIZ1Q9ULJ6 1067 aa21.41■■□□□ 1.02
HMGB3-205ENST00000455596 LRP4O75096 1905 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 H3BM21 787 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 RIOK3O14730 519 aaKnown RBP21.4■■□□□ 1.02
HMGB3-205ENST00000455596 MFAP3LO75121 409 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 PROSCO94903 275 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 TMEM253P0C7T8 217 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 CKMT2P17540 419 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 GJC1P36383 396 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 HSPA9P38646 679 aaKnown RBP21.4■■□□□ 1.02
HMGB3-205ENST00000455596 AP1S1P61966 158 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 ZNF211Q13398 564 aaPredicted RBP21.4■■□□□ 1.02
HMGB3-205ENST00000455596 PTK2BQ14289 1009 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 SMAD1Q15797 465 aaKnown RBP21.4■■□□□ 1.02
HMGB3-205ENST00000455596 ZNF542PQ5EBM4 170 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 ZSWIM9Q86XI8 627 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 BBS5Q8N3I7 341 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 TP53I13Q8NBR0 393 aaPredicted RBP21.4■■□□□ 1.02
HMGB3-205ENST00000455596 OR4C6Q8NH72 309 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 FAM71BQ8TC56 605 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 NSMCE1Q8WV22 266 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 ATP8A1Q9Y2Q0 1164 aa21.4■■□□□ 1.02
HMGB3-205ENST00000455596 NEMP2A6NFY4 417 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 TRIM38O00635 465 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 TOR1BO14657 336 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 MUSKO15146 869 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 FFAR2O15552 330 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 SIGLEC6O43699 453 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 MAFKO60675 156 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 CSF2P04141 144 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 ALPPL2P10696 532 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 NME1P15531 152 aaKnown RBP21.39■■□□□ 1.01
HMGB3-205ENST00000455596 IL4RP24394 825 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 MMP12P39900 470 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 THOP1P52888 689 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 ADKP55263 362 aaKnown RBP21.39■■□□□ 1.01
HMGB3-205ENST00000455596 YPEL5P62699 121 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 POLR2LP62875 67 aaKnown RBP21.39■■□□□ 1.01
HMGB3-205ENST00000455596 MMRN1Q13201 1228 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 PROX2Q3B8N5 592 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 ECHDC3Q96DC8 303 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 CCDC42Q96M95 316 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 CHP1Q99653 195 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 COQ6Q9Y2Z9 468 aa21.39■■□□□ 1.01
HMGB3-205ENST00000455596 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.38■■□□□ 1.01
HMGB3-205ENST00000455596 PEX11BO96011 259 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 CD48P09326 243 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 C6P13671 934 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 ARSEP51690 589 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 ILKQ13418 452 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 DPYSL3Q14195 570 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 LRRC14Q15048 493 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 PDK2Q15119 407 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 ATP13A4Q4VNC1 1196 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 KDM7AQ6ZMT4 941 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 CNGA4Q8IV77 575 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 KCTD6Q8NC69 237 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 CAAP1Q9H8G2 361 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 NHEJ1Q9H9Q4 299 aaPredicted RBP21.38■■□□□ 1.01
HMGB3-205ENST00000455596 MBNL1Q9NR56 388 aaKnown RBP21.38■■□□□ 1.01
HMGB3-205ENST00000455596 NLGN3Q9NZ94 848 aa21.38■■□□□ 1.01
HMGB3-205ENST00000455596 TRAFD1O14545 582 aaPredicted RBP21.37■■□□□ 1.01
HMGB3-205ENST00000455596 SCAMP1O15126 338 aa21.37■■□□□ 1.01
HMGB3-205ENST00000455596 KRT37O76014 449 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms