RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 RBMS1P29558 406 aaKnown RBP7.87□□□□□ -1.15
CD44-211ENST00000442151 SERPINA4P29622 427 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 ACVRL1P37023 503 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 HSPA9P38646 679 aaKnown RBP7.87□□□□□ -1.15
CD44-211ENST00000442151 HCAR3P49019 387 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 NUMBP49757 651 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 NSUN2Q08J23 767 aaKnown RBP eCLIP7.87□□□□□ -1.15
CD44-211ENST00000442151 PTP4A2Q12974 167 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 SERINC3Q13530 473 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 ELOCQ15369 112 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 COL28A1Q2UY09 1125 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 TMEM52BQ4KMG9 183 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 C2CD6Q53TS8 623 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 SEL1L3Q68CR1 1132 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 C19orf48Q6RUI8 117 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 GCNT7Q6ZNI0 430 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 MON1BQ7L1V2 547 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 PARS2Q7L3T8 475 aaKnown RBP7.87□□□□□ -1.15
CD44-211ENST00000442151 TMC6Q7Z403 805 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 GKN2Q86XP6 184 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 MCOLN2Q8IZK6 566 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 DCBLD1Q8N8Z6 715 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 JOSD2Q8TAC2 188 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 SNIP1Q8TAD8 396 aaKnown RBP7.87□□□□□ -1.15
CD44-211ENST00000442151 MAPK15Q8TD08 544 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 FNIP1Q8TF40 1166 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 APOLD1Q96LR9 279 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 PSMG3-AS1Q96PY0 264 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 MYOCQ99972 504 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 SUV39H2Q9H5I1 410 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 ATP13A3Q9H7F0 1226 aa7.87□□□□□ -1.15
CD44-211ENST00000442151 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.86□□□□□ -1.15
CD44-211ENST00000442151 A0A1W2PQC6 194 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 EEF2KO00418 725 aaKnown RBP7.86□□□□□ -1.15
CD44-211ENST00000442151 TRIM38O00635 465 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 SDC3O75056 442 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 TCEA3O75764 348 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 TMCC1O94876 653 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 RASGRP1O95267 797 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 TNFP01375 233 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 METAP1P53582 386 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 CLDN2P57739 230 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 ERVPABLB-1P60509 514 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 PFN3P60673 137 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 PPARDQ03181 441 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 PDE1CQ14123 709 aaPredicted RBP7.86□□□□□ -1.15
CD44-211ENST00000442151 LRRC14Q15048 493 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 BOLA3Q53S33 107 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 RALGPS1Q5JS13 557 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 TRNP1Q6NT89 227 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 PHLDB2Q86SQ0 1253 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 LRRC49Q8IUZ0 686 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 ZNF248Q8NDW4 579 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 LMX1AQ8TE12 382 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 ZNF599Q96NL3 588 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 MCEEQ96PE7 176 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 UBL7Q96S82 380 aaPredicted RBP7.86□□□□□ -1.15
CD44-211ENST00000442151 PCDHB18PQ96TA0 734 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 ZWILCHQ9H900 591 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 TMPRSS4Q9NRS4 437 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 GPR27Q9NS67 375 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 AIPL1Q9NZN9 384 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 LCMT1Q9UIC8 334 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 ASPMQ8IZT6 3477 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 CABIN1Q9Y6J0 2220 aa7.86□□□□□ -1.15
CD44-211ENST00000442151 TMEM131Q92545 1883 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 H3BRJ5 948 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 I6L893 689 aaPredicted RBP7.85□□□□□ -1.15
CD44-211ENST00000442151 K7ESM1 405 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 AREL1O15033 823 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 FFAR2O15552 330 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 CCP110O43303 1012 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 PALMO75781 387 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 TIMP2P16035 220 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 ARL4AP40617 200 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 EIF2S3P41091 472 aaKnown RBP7.85□□□□□ -1.15
CD44-211ENST00000442151 LSSP48449 732 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 KLK7P49862 253 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 SEMG2Q02383 582 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 BCL2L1Q07817 233 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 IL10RBQ08334 325 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 FZD2Q14332 565 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 MACC1Q6ZN28 852 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 SRLQ86TD4 932 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 CCDC185Q8N715 623 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 IFI44Q8TCB0 444 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 CENPTQ96BT3 561 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 CINPQ9BW66 212 aaPredicted RBP7.85□□□□□ -1.15
CD44-211ENST00000442151 DPH1Q9BZG8 443 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 SP110Q9HB58 689 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 SLC24A3Q9HC58 644 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 FZD3Q9NPG1 666 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 THSD1Q9NS62 852 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 SEPT3Q9UH03 358 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 APOBEC3BQ9UH17 382 aaKnown RBP7.85□□□□□ -1.15
CD44-211ENST00000442151 AP4E1Q9UPM8 1137 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 PTPRBP23467 1997 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 FAM208BQ5VWN6 2430 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 DOCK4Q8N1I0 1966 aa7.85□□□□□ -1.15
CD44-211ENST00000442151 EME2A4GXA9 379 aaPredicted RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms