RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 RIC1Q4ADV7 1423 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 TLL1O43897 1013 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 PAGE1O75459 146 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 GRM5P41594 1212 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 TRAF3Q13114 568 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 ARSHQ5FYA8 562 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 CDC73Q6P1J9 531 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 ARMC8Q8IUR7 673 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 C2orf73Q8N5S3 287 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-209ENST00000438120 ADAM28Q9UKQ2 775 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 OR10H1Q9Y4A9 318 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 CD3EAPO15446 510 aaKnown RBP17.28■□□□□ 0.36
PTPRF-209ENST00000438120 ZW10O43264 779 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 RXRGP48443 463 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 INHBEP58166 350 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 CERCAMQ5T4B2 595 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 C16orf62Q7Z3J2 963 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 ADHFE1Q8IWW8 467 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 REXO5Q96IC2 774 aaKnown RBP17.28■□□□□ 0.36
PTPRF-209ENST00000438120 FTHL17Q9BXU8 183 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 ACE2Q9BYF1 805 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-209ENST00000438120 LRRC19Q9H756 370 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 PREX1Q8TCU6 1659 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 A0A1W2PPM1 405 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 SLC25A14O95258 325 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-209ENST00000438120 GSTM5P46439 218 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 CDH13P55290 713 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 ALYREFQ86V81 257 aaKnown RBP17.28■□□□□ 0.36
PTPRF-209ENST00000438120 SNX15Q9NRS6 342 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 CAPN15O75808 1086 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 RPL9P32969 192 aaKnown RBP17.28■□□□□ 0.36
PTPRF-209ENST00000438120 FLT3LGP49771 235 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 CDK18Q07002 472 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 SQLEQ14534 574 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 GPRIN3Q6ZVF9 776 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 TRAPPC9Q96Q05 1148 aa17.28■□□□□ 0.36
PTPRF-209ENST00000438120 SKP1P63208 163 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 ANKS1BQ7Z6G8 1248 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 PARP8Q8N3A8 854 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 OR4L1Q8NH43 312 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF671Q8TAW3 534 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 MCM8Q9UJA3 840 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 CENPXA8MT69 81 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 MED26O95402 600 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 LPOP22079 712 aaPredicted RBP17.27■□□□□ 0.36
PTPRF-209ENST00000438120 ELF3P78545 371 aaPredicted RBP17.27■□□□□ 0.36
PTPRF-209ENST00000438120 ZNHIT3Q15649 155 aaPredicted RBP17.27■□□□□ 0.36
PTPRF-209ENST00000438120 OFCC1Q8IZS5 231 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 CEP44Q9C0F1 390 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 PSME2Q9UL46 239 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 SATB2Q9UPW6 733 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 GIT1Q9Y2X7 761 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 LRRC14BA6NHZ5 514 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 PSME3P61289 254 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 CYP4F2P78329 520 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 CYP4F3Q08477 520 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 ILF2Q12905 390 aaKnown RBP17.27■□□□□ 0.36
PTPRF-209ENST00000438120 MTAPQ13126 283 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 SPESP1Q6UW49 350 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 BBS12Q6ZW61 710 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 EIF3MQ7L2H7 374 aaKnown RBP17.27■□□□□ 0.36
PTPRF-209ENST00000438120 C8orf59Q8N0T1 100 aaPredicted RBP17.27■□□□□ 0.36
PTPRF-209ENST00000438120 SLITRK2Q9H156 845 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 ZNF232Q9UNY5 417 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 LRCH1Q9Y2L9 728 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 RIPK3Q9Y572 518 aa17.27■□□□□ 0.36
PTPRF-209ENST00000438120 OPLAHO14841 1288 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 ACSL4O60488 711 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 MLYCDO95822 493 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 ST13P50502 369 aaKnown RBP17.27■□□□□ 0.35
PTPRF-209ENST00000438120 KCTD21Q4G0X4 260 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 KLHL17Q6TDP4 642 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 ZNF557Q8N988 423 aaPredicted RBP17.27■□□□□ 0.35
PTPRF-209ENST00000438120 ATL1Q8WXF7 558 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 MMADHCQ9H3L0 296 aaPredicted RBP17.27■□□□□ 0.35
PTPRF-209ENST00000438120 NR2F1P10589 423 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 INO80DQ53TQ3 878 aaPredicted RBP17.27■□□□□ 0.35
PTPRF-209ENST00000438120 P2RY11Q96G91 374 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 SLCO1B3Q9NPD5 702 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 TMEM216Q9P0N5 145 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 ENOPH1Q9UHY7 261 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 ASF1AQ9Y294 204 aa17.27■□□□□ 0.35
PTPRF-209ENST00000438120 MTF2Q9Y483 593 aaPredicted RBP17.27■□□□□ 0.35
PTPRF-209ENST00000438120 EFCAB10A6NFE3 127 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 SNX3O60493 162 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 COL9A3Q14050 684 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 ARHGAP36Q6ZRI8 547 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 IRF2BP2Q7Z5L9 587 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 MRPL57Q9BQC6 102 aaKnown RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 PRDM16Q9HAZ2 1276 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 MAT2BQ9NZL9 334 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 ARIH1Q9Y4X5 557 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 FTH1P02794 183 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 LSM3P62310 102 aaKnown RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 FSTL1Q12841 308 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 SLC9A9Q8IVB4 645 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 PCDHB18PQ96TA0 734 aa17.26■□□□□ 0.35
PTPRF-209ENST00000438120 NOL6Q9H6R4 1146 aaKnown RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 AKAP7Q9P0M2 348 aaPredicted RBP17.26■□□□□ 0.35
PTPRF-209ENST00000438120 NDUFV1P49821 464 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms