RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 SZRD1Q7Z422 152 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF804AQ7Z570 1209 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 UBE2Q1Q7Z7E8 422 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 FAM9BQ8IZU0 186 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 TTC39CQ8N584 583 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 MAFAQ8NHW3 353 aaPredicted RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 KIF1BPQ96EK5 621 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 KAZALD1Q96I82 304 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 FBXL20Q96IG2 436 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 LOXL4Q96JB6 756 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 WWC2-AS2Q96NR7 200 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 PARK7Q99497 189 aaKnown RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 MPHOSPH8Q99549 860 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 CLSTN3Q9BQT9 956 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 STRA6Q9BX79 667 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 TRIM31Q9BZY9 425 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 CTDSP1Q9GZU7 261 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 COA1Q9GZY4 146 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 XYLT2Q9H1B5 865 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 SH3GLB2Q9NR46 395 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 CEP72Q9P209 647 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 FBXO40Q9UH90 709 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 SLCO3A1Q9UIG8 710 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 PKP3Q9Y446 797 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 POLR2AP24928 1970 aaKnown RBP4.32□□□□□ -1.72
HMGB3-203ENST00000430118 TAF1P21675 1872 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 MUC3AQ02505 3323 aa4.32□□□□□ -1.72
HMGB3-203ENST00000430118 SSC5DA1L4H1 1573 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 MAPK8IP3Q9UPT6 1336 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 PIPSLA2A3N6 862 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 PABPN1LA6NDY0 278 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 DBX1A6NMT0 343 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 MCIDASD6RGH6 385 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 PTGES3LE9PB15 166 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 AP4M1O00189 453 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 PER2O15055 1255 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 SUV39H1O43463 412 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 PRAMEF2O60811 474 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 DNTTP04053 509 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 EIF2S1P05198 315 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 SPARCP09486 303 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 FOSL2P15408 326 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 TGM2P21980 687 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 NFKBIAP25963 317 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ZFP36P26651 326 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 NDUFS1P28331 727 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 AVPR2P30518 371 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ACTN2P35609 894 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 NNMTP40261 264 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 PSMC4P43686 418 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 GABRB2P47870 512 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 SLC37A1P57057 533 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 WDR5P61964 334 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 EFNB1P98172 346 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 GOLGA8DPQ0D2H9 430 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 NEXNQ0ZGT2 675 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 STK4Q13043 487 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 SEMA3AQ14563 771 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ICAM4Q14773 271 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF124Q15973 351 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 CNGA3Q16281 694 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 KRTAP19-4Q3LI73 84 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ALDH1L2Q3SY69 923 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 TIGD2Q4W5G0 525 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 AARS2Q5JTZ9 985 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 CDC73Q6P1J9 531 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 TMEM81Q6P7N7 255 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 KYAT3Q6YP21 454 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 FAM83HQ6ZRV2 1179 aaPredicted RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 C1QL4Q86Z23 238 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 BRSK2Q8IWQ3 736 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ADGRF3Q8IZF5 1079 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ADGRF2Q8IZF7 708 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 SRBD1Q8N5C6 995 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 FEZF2Q8TBJ5 459 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 KCNJ9Q92806 393 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 P2RY11Q96G91 374 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 CALML4Q96GE6 196 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 HIC2Q96JB3 615 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 CLMNQ96JQ2 1002 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 LBHD1Q9BQE6 289 aaPredicted RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 C1QTNF1Q9BXJ1 281 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 USP29Q9HBJ7 922 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 DLL3Q9NYJ7 618 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 TESQ9UGI8 421 aaKnown RBP4.31□□□□□ -1.72
HMGB3-203ENST00000430118 SLC25A13Q9UJS0 675 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ADAMTS5Q9UNA0 930 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 KCNE2Q9Y6J6 123 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 SCN9AQ15858 1988 aa4.31□□□□□ -1.72
HMGB3-203ENST00000430118 ECM29Q5VYK3 1845 aa4.3□□□□□ -1.72
HMGB3-203ENST00000430118 CEP290O15078 2479 aa4.3□□□□□ -1.72
HMGB3-203ENST00000430118 ZBED9Q6R2W3 1325 aa4.3□□□□□ -1.72
HMGB3-203ENST00000430118 TEX13CA0A0J9YWL9 993 aa4.3□□□□□ -1.72
HMGB3-203ENST00000430118 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.3□□□□□ -1.72
HMGB3-203ENST00000430118 A0A1W2PRG0 241 aa4.3□□□□□ -1.72
HMGB3-203ENST00000430118 VWC2LB2RUY7 222 aa4.3□□□□□ -1.72
HMGB3-203ENST00000430118 SYN3O14994 580 aa4.3□□□□□ -1.72
HMGB3-203ENST00000430118 TGFB1I1O43294 461 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms