RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 INSIG1O15503 277 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 POP4O95707 220 aaKnown RBP13.13□□□□□ -0.31
VRK3-203ENST00000424804 MPOP05164 745 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 UGT2B4P06133 528 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 TIMP2P16035 220 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 TGM2P21980 687 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 EPHB2P29323 1055 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 SSR1P43307 286 aaKnown RBP13.13□□□□□ -0.31
VRK3-203ENST00000424804 PDE1CQ14123 709 aaPredicted RBP13.13□□□□□ -0.31
VRK3-203ENST00000424804 CYTH1Q15438 398 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 ALKBH5Q6P6C2 394 aaKnown RBP13.13□□□□□ -0.31
VRK3-203ENST00000424804 NYAP1Q6ZVC0 841 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 PARGQ86W56 976 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 SPACA3Q8IXA5 215 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 RBFAQ8N0V3 343 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 TP53I13Q8NBR0 393 aaPredicted RBP13.13□□□□□ -0.31
VRK3-203ENST00000424804 DENND6BQ8NEG7 585 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 OR8K1Q8NGG5 319 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 EPAS1Q99814 870 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 CLPBQ9H078 707 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 RBSNQ9H1K0 784 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 ISCUQ9H1K1 167 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 DHX35Q9H5Z1 703 aaKnown RBP13.13□□□□□ -0.31
VRK3-203ENST00000424804 USP29Q9HBJ7 922 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 ASCL3Q9NQ33 180 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 ABHD10Q9NUJ1 306 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 AP4E1Q9UPM8 1137 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 MFHAS1Q9Y4C4 1052 aa13.13□□□□□ -0.31
VRK3-203ENST00000424804 NEMP2A6NFY4 417 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 KRIT1O00522 736 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 FPGTO14772 594 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 ATXN7O15265 892 aaPredicted RBP13.12□□□□□ -0.31
VRK3-203ENST00000424804 DAPK3O43293 454 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 AQP9O43315 295 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 AKR1B10O60218 316 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 PRPSAP2O60256 369 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 MMP20O60882 483 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 CSO75390 466 aaKnown RBP13.12□□□□□ -0.31
VRK3-203ENST00000424804 TMCC1O94876 653 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 JUNDP17535 347 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 ACTN2P35609 894 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 LSSP48449 732 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 TPI1P60174 286 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 SNRPD1P62314 119 aaKnown RBP13.12□□□□□ -0.31
VRK3-203ENST00000424804 SKOR1P84550 965 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 CCDC173Q0VFZ6 552 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 POLD3Q15054 466 aaPredicted RBP13.12□□□□□ -0.31
VRK3-203ENST00000424804 LRRC73Q5JTD7 316 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 PERM1Q5SV97 790 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 GUSBP11Q6P575 273 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 GDPD4Q6W3E5 623 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 ZSCAN30Q86W11 494 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 RTL3Q8N8U3 475 aaKnown RBP13.12□□□□□ -0.31
VRK3-203ENST00000424804 IFI44Q8TCB0 444 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 FUBP1Q96AE4 644 aaKnown RBP13.12□□□□□ -0.31
VRK3-203ENST00000424804 ARHGEF26Q96DR7 871 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 BTBD6Q96KE9 485 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 DUSP23Q9BVJ7 150 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 NUP85Q9BW27 656 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 BOCQ9BWV1 1114 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 ZWILCHQ9H900 591 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 LHX3Q9UBR4 397 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 SALL4Q9UJQ4 1053 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 ANAPC7Q9UJX3 599 aa13.12□□□□□ -0.31
VRK3-203ENST00000424804 PMS2P1A4D2B8 440 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 AKR1B15C9JRZ8 316 aaPredicted RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 TK2O00142 265 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 TPP1O14773 563 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 RRP8O43159 456 aaKnown RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 RAMP2O60895 175 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 MFAP3LO75121 409 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 USP12O75317 370 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 ALPPL2P10696 532 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 MIPP30301 263 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 GJC1P36383 396 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 ETFBP38117 255 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 SGCGQ13326 291 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 SERINC3Q13530 473 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 C1orf61Q13536 156 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 CDKN3Q16667 212 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 CA9Q16790 459 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 ISXQ2M1V0 245 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 DEFB133Q30KQ1 61 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 TMEM52BQ4KMG9 183 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 INO80DQ53TQ3 878 aaPredicted RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 PPP6R3Q5H9R7 873 aaPredicted RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 ZCCHC8Q6NZY4 707 aaKnown RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 LRRC69Q6ZNQ3 347 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 LMX1AQ8TE12 382 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 SLC39A7Q92504 469 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 HMCESQ96FZ2 354 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 NSMCE3Q96MG7 304 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 ZNF578Q96N58 590 aaPredicted RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 FCRL3Q96P31 734 aaPredicted RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 PEBP4Q96S96 227 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 CHP1Q99653 195 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 SNRNP25Q9BV90 132 aaKnown RBP13.11□□□□□ -0.31
VRK3-203ENST00000424804 PDFQ9HBH1 243 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 CTTNBP2NLQ9P2B4 639 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 DKK3Q9UBP4 350 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms