RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 PCDH9Q9HC56 1237 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 VPS45Q9NRW7 570 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 PAK5Q9P286 719 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 PCYOX1Q9UHG3 505 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 FAM153AQ9UHL3 310 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 CYP8B1Q9UNU6 501 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 NEU2Q9Y3R4 380 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 FANCMQ8IYD8 2048 aa17.14■□□□□ 0.33
COL7A1-202ENST00000422991 MYO15AQ9UKN7 3530 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 PROB1E7EW31 1015 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 FZD6O60353 706 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 ANXA9O76027 345 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 PGLSO95336 258 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 ECEL1O95672 775 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 CPP00450 1065 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 ZSCAN5DPP0CG00 497 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 ADRB3P13945 408 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 RPL22P35268 128 aaKnown RBP17.13■□□□□ 0.33
COL7A1-202ENST00000422991 ACTN2P35609 894 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 NEK3P51956 506 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 GEMP55040 296 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 C2orf54Q08AI8 447 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 MPP3Q13368 585 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 NUMA1Q14980 2115 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 CFAP58Q5T655 872 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 GANCQ8TET4 914 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 PDCD6IPQ8WUM4 868 aaKnown RBP17.13■□□□□ 0.33
COL7A1-202ENST00000422991 RUNDC3BQ96NL0 473 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 PPP1R2P1Q96PQ5 205 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 TRIB3Q96RU7 358 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 MLPHQ9BV36 600 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-202ENST00000422991 UBP1Q9NZI7 540 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 FEZ2Q9UHY8 353 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-202ENST00000422991 NCKAP1Q9Y2A7 1128 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 PCDHB9Q9Y5E1 797 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 USP34Q70CQ2 3546 aa17.13■□□□□ 0.33
COL7A1-202ENST00000422991 IGHV1OR15-9A0A0B4J2B8 117 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 A0A1W2PQ67 120 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 UPK3BL1B0FP48 263 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 UPK3BL2E5RIL1 263 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 SLC7A4O43246 635 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 PMPCBO75439 489 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 GAS8O95995 478 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 PRLP01236 227 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 KRT14P02533 472 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 TIMP2P16035 220 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 FDFT1P37268 417 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 ABL2P42684 1182 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 PTGIRP43119 386 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 WNT3AP56704 352 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 PRPSAP1Q14558 356 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 KCTD19Q17RG1 926 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-202ENST00000422991 USP39Q53GS9 565 aaKnown RBP17.12■□□□□ 0.33
COL7A1-202ENST00000422991 ARMC12Q5T9G4 340 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 FAXCQ5TGI0 409 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 C4orf22Q6V702 233 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-202ENST00000422991 FAM124AQ86V42 546 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 FAM160A2Q8N612 972 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-202ENST00000422991 RLN3Q8WXF3 142 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 FEM1CQ96JP0 617 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 SPACA7Q96KW9 195 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 MRGPRX2Q96LB1 330 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 NEUROG2Q9H2A3 272 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 ZSCAN32Q9NX65 697 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 CHKBQ9Y259 395 aa17.12■□□□□ 0.33
COL7A1-202ENST00000422991 SPINT1O43278 529 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 PLRG1O43660 514 aaKnown RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 PDHA1P08559 390 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 OXTRP30559 389 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 SUOXP51687 545 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 ADPRHP54922 357 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 TAS2R38P59533 333 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 RPL26P61254 145 aaKnown RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 DR1Q01658 176 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 CDK18Q07002 472 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 CCDC15Q0P6D6 951 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 TRIP13Q15645 432 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 PCSK7Q16549 785 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 UGP2Q16851 508 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 LRRC73Q5JTD7 316 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 FBXL19Q6PCT2 694 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 TAB3Q8N5C8 712 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 PAF1Q8N7H5 531 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 FRMD1Q8N878 549 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 ZBTB44Q8NCP5 570 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 IPMKQ8NFU5 416 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 PIH1D2Q8WWB5 315 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 RAB7BQ96AH8 199 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 KRT12Q99456 494 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 RAB6BQ9NRW1 208 aa17.11■□□□□ 0.33
COL7A1-202ENST00000422991 WSB2Q9NYS7 404 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 MBD1Q9UIS9 605 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 RPL26L1Q9UNX3 145 aaKnown RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 AAR2Q9Y312 384 aaKnown RBP17.11■□□□□ 0.33
COL7A1-202ENST00000422991 CEP192Q8TEP8 1941 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.1■□□□□ 0.33
COL7A1-202ENST00000422991 GOLGA6CA6NDK9 693 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 GOLGA6BA6NDN3 693 aa17.1■□□□□ 0.33
COL7A1-202ENST00000422991 AREL1O15033 823 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms