RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FRA10AC1Q70Z53 315 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 SLC26A9Q7LBE3 791 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 GTF2IRD2Q86UP8 949 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 RETREG3Q86VR2 466 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 SPPL2CQ8IUH8 684 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 PSTKQ8IV42 348 aaKnown RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 ADGRG5Q8IZF4 528 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 GOLM1Q8NBJ4 401 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 ABHD11Q8NFV4 315 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 SLC35F5Q8WV83 523 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 EFHD2Q96C19 240 aaPredicted RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 ROPN1LQ96C74 230 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 ATG4CQ96DT6 458 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 HGH1Q9BTY7 390 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 PRDM12Q9H4Q4 367 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 SOX17Q9H6I2 414 aaPredicted RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 RPF1Q9H9Y2 349 aaKnown RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 FANCEQ9HB96 536 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 TBC1D13Q9NVG8 400 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 SCHIP1Q9P0W5 487 aaPredicted RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 DNMT3BQ9UBC3 853 aaKnown RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 KIAA1257Q9ULG3 409 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 FIS1Q9Y3D6 152 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 LACTBL1A8MY62 500 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 PGK1P00558 417 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 CYP2C9P11712 490 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 IL10P22301 178 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 PSMA4P25789 261 aaKnown RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 ARL4AP40617 200 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 ADARB1P78563 741 aaKnown RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 TUBA3CQ13748 450 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 ZNF460Q14592 562 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 INPP5AQ14642 412 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 KCNJ8Q15842 424 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 KCTD11Q693B1 232 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 THOC7Q6I9Y2 204 aaKnown RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 PID1Q7Z2X4 250 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 PIGZQ86VD9 579 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 FUNDC1Q8IVP5 155 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 ZBTB8OSQ8IWT0 167 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 SLC7A5P1Q8MH63 180 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 CLEC4CQ8WTT0 213 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 HDAC10Q969S8 669 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 NXNL1Q96CM4 212 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 SH3YL1Q96HL8 342 aaPredicted RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 LRCH3Q96II8 777 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 NT5C1AQ9BXI3 368 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 CDT1Q9H211 546 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 CHRAC1Q9NRG0 131 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 PKD2L2Q9NZM6 624 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 PGAP2Q9UHJ9 254 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 VWA7Q9Y334 891 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 MTF2Q9Y483 593 aaPredicted RBP10.78□□□□□ -0.68
USP54-204ENST00000422491 PARP14Q460N5 1801 aa10.78□□□□□ -0.68
USP54-204ENST00000422491 TTC24A2A3L6 582 aaPredicted RBP10.77□□□□□ -0.68
USP54-204ENST00000422491 B4GAT1O43505 415 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 KDM1AO60341 852 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 S100A1P23297 94 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 HPCAL1P37235 193 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 ARCN1P48444 511 aaKnown RBP10.77□□□□□ -0.68
USP54-204ENST00000422491 DNAJB13P59910 316 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 PLCL1Q15111 1095 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 PSMD5Q16401 504 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 LDLRAP1Q5SW96 308 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 ZNF618Q5T7W0 954 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 SLC41A1Q8IVJ1 513 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 TP53INP2Q8IXH6 220 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 DDIASQ8IXT1 998 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 TMCO5AQ8N6Q1 288 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 DNAAF3Q8N9W5 541 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 CCNYQ8ND76 341 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 BPIFB6Q8NFQ5 453 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 CCDC97Q96F63 343 aaPredicted RBP10.77□□□□□ -0.68
USP54-204ENST00000422491 HPDLQ96IR7 371 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 RHOBTB2Q9BYZ6 727 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 TRIM15Q9C019 465 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 GBA3Q9H227 469 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 POMKQ9H5K3 350 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 RPAP3Q9H6T3 665 aaPredicted RBP10.77□□□□□ -0.68
USP54-204ENST00000422491 SACM1LQ9NTJ5 587 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 RCOR3Q9P2K3 495 aaPredicted RBP10.77□□□□□ -0.68
USP54-204ENST00000422491 SUN2Q9UH99 717 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 SLC27A5Q9Y2P5 690 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 ACOT9Q9Y305 439 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 TRAF6Q9Y4K3 522 aa10.77□□□□□ -0.68
USP54-204ENST00000422491 CCDC78A2IDD5 438 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 CLDN25C9JDP6 229 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 KCNK1O00180 336 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 ACKR2O00590 384 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 SNAP29O95721 258 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 HSD17B1P14061 328 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 NMBRP28336 390 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 AXLP30530 894 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 RPS9P46781 194 aaKnown RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 GJA9P57773 515 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 CBX2Q14781 532 aaPredicted RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 SOWAHAQ2M3V2 549 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 EML3Q32P44 896 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 AGAP7PQ5VUJ5 663 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 IER5Q5VY09 327 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms