RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PTPRCAPQ14761 206 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 CATSPER1Q8NEC5 780 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 EMID1Q96A84 441 aaPredicted RBP21.13■□□□□ 0.97
CTCF-202ENST00000401394 A0A1W2PPW3 197 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 A8MT66 165 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 STAU1O95793 577 aaKnown RBP21.13■□□□□ 0.97
CTCF-202ENST00000401394 CAPNS1P04632 268 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 CCDC166P0CW27 439 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 ARCN1P48444 511 aaKnown RBP21.13■□□□□ 0.97
CTCF-202ENST00000401394 ALDH3B2P48448 385 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 PGFP49763 221 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 CSE1LP55060 971 aaKnown RBP21.13■□□□□ 0.97
CTCF-202ENST00000401394 TXNL4AP83876 142 aaKnown RBP21.13■□□□□ 0.97
CTCF-202ENST00000401394 CDH17Q12864 832 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 PAN2Q504Q3 1202 aaKnown RBP21.13■□□□□ 0.97
CTCF-202ENST00000401394 TTC16Q8NEE8 873 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 DDI1Q8WTU0 396 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 CYGBQ8WWM9 190 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 DLG3Q92796 817 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 UNC93B1Q9H1C4 597 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 ARMC7Q9H6L4 198 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 PLEKHA5Q9HAU0 1116 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 IGSF5Q9NSI5 407 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 ZNF510Q9Y2H8 683 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 NR5A2O00482 541 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 GPR107Q5VW38 600 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 DENND5AQ6IQ26 1287 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 UNC93AQ86WB7 457 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 MAELQ96JY0 434 aaKnown RBP21.12■□□□□ 0.97
CTCF-202ENST00000401394 HSFY1Q96LI6 401 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 MRPL46Q9H2W6 279 aaKnown RBP21.12■□□□□ 0.97
CTCF-202ENST00000401394 LTB4R2Q9NPC1 389 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 PLK2Q9NYY3 685 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 NCKIPSDQ9NZQ3 722 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 PIN4Q9Y237 131 aaKnown RBP21.12■□□□□ 0.97
CTCF-202ENST00000401394 PIRO00625 290 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 GJB3O75712 270 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 C8BP07358 591 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 CDK9P50750 372 aaKnown RBP21.12■□□□□ 0.97
CTCF-202ENST00000401394 CLCN2P51788 898 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 LILRA4P59901 499 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 MAXP61244 160 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 NAA20P61599 178 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 ECT2LQ008S8 904 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 FGD3Q5JSP0 725 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 OGFOD2Q6N063 350 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 TMEM207Q6UWW9 146 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 ISOC1Q96CN7 298 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 ALG9Q9H6U8 611 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 CRTAC1Q9NQ79 661 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 SLC4A1P02730 911 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 SEMA3BQ13214 749 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 ZNF484Q5JVG2 852 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 ZMIZ2Q8NF64 920 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 RNF34Q969K3 372 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 SPAG4Q9NPE6 437 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 CD300AQ9UGN4 299 aa21.12■□□□□ 0.97
CTCF-202ENST00000401394 NME4O00746 187 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 TOMM70O94826 608 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 SUPT7LO94864 414 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 TNK2Q07912 1038 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 PMS2P3Q13401 168 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 FAM83EQ2M2I3 478 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 PKN3Q6P5Z2 889 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 TMEM26Q6ZUK4 368 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 EXOC8Q8IYI6 725 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 SGCDQ92629 289 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 NSUN5Q96P11 429 aaKnown RBP21.11■□□□□ 0.97
CTCF-202ENST00000401394 SMOQ99835 787 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 COLEC11Q9BWP8 271 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 VTI1BQ9UEU0 232 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 STAP1Q9ULZ2 295 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 NR4A1P22736 598 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 TPP2P29144 1249 aaPredicted RBP21.11■□□□□ 0.97
CTCF-202ENST00000401394 RPL34P49207 117 aaKnown RBP21.11■□□□□ 0.97
CTCF-202ENST00000401394 SNX16P57768 344 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 GRB7Q14451 532 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 TAPT1Q6NXT6 567 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 OR52K2Q8NGK3 314 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 MIPOL1Q8TD10 442 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 KIFC1Q9BW19 673 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 KCTD3Q9Y597 815 aa21.11■□□□□ 0.97
CTCF-202ENST00000401394 DNAJC25-GNG10A0A024R161 153 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 J3QRK9 145 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 HUS1O60921 280 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 SLC27A1Q6PCB7 646 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 DHFR2Q86XF0 187 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 ERI1Q8IV48 349 aaKnown RBP21.1■□□□□ 0.97
CTCF-202ENST00000401394 FBXL8Q96CD0 374 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 OSBPL11Q9BXB4 747 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 MAP10Q9P2G4 905 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 RCOR3Q9P2K3 495 aaPredicted RBP21.1■□□□□ 0.97
CTCF-202ENST00000401394 OAZ3Q9UMX2 235 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 BTRCQ9Y297 605 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 CRYL1Q9Y2S2 319 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 NRP2O60462 931 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 SNRPB2P08579 225 aaKnown RBP21.1■□□□□ 0.97
CTCF-202ENST00000401394 ACADSBP45954 432 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 NEDD8Q15843 81 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 KIF19Q2TAC6 998 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms