RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 WDR55Q9H6Y2 383 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 CHURC1-FNTBB4DL54 471 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 B3GAT3O94766 335 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 CALCAP01258 141 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 ADRA2BP18089 450 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 CTSKP43235 329 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 SOX10P56693 466 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 SLC1A5Q15758 541 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 PRR23BQ6ZRT6 265 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 APTXQ7Z2E3 356 aaKnown RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 CBR4Q8N4T8 237 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 TRPV3Q8NET8 790 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 SPOCK2Q92563 424 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 FAM126AQ9BYI3 521 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 OSGEPL1Q9H4B0 414 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 PNPLA8Q9NP80 782 aa11.92□□□□□ -0.5
SYNPO-202ENST00000394243 BARX2Q9UMQ3 279 aaPredicted RBP11.92□□□□□ -0.5
SYNPO-202ENST00000394243 AIREO43918 545 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ANGPTL1O95841 491 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 BPGMP07738 259 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 SREBF1P36956 1147 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PIK3CGP48736 1102 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ARHGDIBP52566 201 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ATN1P54259 1190 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ILF2Q12905 390 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 TRIM28Q13263 835 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PIWIL4Q7Z3Z4 852 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 NELL1Q92832 810 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 HOPXQ9BPY8 73 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 RGS17Q9UGC6 210 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ABCG2Q9UNQ0 655 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 MLYCDO95822 493 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 EIF2S3P41091 472 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 RAB27AP51159 221 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 GCNT1Q02742 428 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ACVR2BQ13705 512 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 KLHDC10Q6PID8 442 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 CYP20A1Q6UW02 462 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 RPTNQ6XPR3 784 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 LRTOMTQ8WZ04 291 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PIK3R3Q92569 461 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 TMEM159Q96B96 161 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 EMC3Q9P0I2 261 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 EIF3KQ9UBQ5 218 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 MAGEL2Q9UJ55 1249 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 KDM6AO15550 1401 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 A0A0J9YYE9 177 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 TCRBV9S1A1TA0A576 114 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 FAM149AA5PLN7 773 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ANKDD1BA6NHY2 528 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 BTNL10A8MVZ5 291 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 CCNCP24863 283 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PSMA1P25786 263 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 RAB10P61026 200 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PPP2R2BQ00005 443 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ATP13A5Q4VNC0 1218 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ATP13A4Q4VNC1 1196 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 TMPRSS11AQ6ZMR5 421 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ING5Q8WYH8 240 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 LPGAT1Q92604 370 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PIGKQ92643 395 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 TRNT1Q96Q11 434 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 RBM4BQ9BQ04 359 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 RBM4Q9BWF3 364 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 NLNQ9BYT8 704 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 SNX15Q9NRS6 342 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ZNF232Q9UNY5 417 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 CDC42BPGQ6DT37 1551 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PLK4O00444 970 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 NUDT14O95848 222 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 IDO1P14902 403 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 IGFBP5P24593 272 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 TUBP50607 506 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 RAB15P59190 212 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 BTN3A2P78410 334 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 OVOS1Q6IE37 1185 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 AHSA2Q719I0 299 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 R3HCC1LQ7Z5L2 792 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 TEX47Q8TBZ9 253 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 NODALQ96S42 347 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ANGPT4Q9Y264 503 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 A0A0A0MRY4 1105 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 CYP1A2P05177 515 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 MAMLD1Q13495 774 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PCID2Q5JVF3 399 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 APOBEC3FQ8IUX4 373 aaKnown RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 SPATA20Q8TB22 786 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 LNX1Q8TBB1 728 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PPP3R2Q96LZ3 170 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 SPATA13Q96N96 652 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ERMAPQ96PL5 475 aaPredicted RBP11.91□□□□□ -0.5
SYNPO-202ENST00000394243 PNMA5Q96PV4 448 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 GRHL1Q9NZI5 618 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 ZFYVE16Q7Z3T8 1539 aa11.91□□□□□ -0.5
SYNPO-202ENST00000394243 CXCL8P10145 99 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 PRKCIP41743 596 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 CDH8P55286 799 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 GRSF1Q12849 480 aaKnown RBP eCLIP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 PPM1LQ5SGD2 360 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 HELQQ8TDG4 1101 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms