RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 PARVAQ9NVD7 372 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 DKK3Q9UBP4 350 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 APOBEC3BQ9UH17 382 aaKnown RBP16.75■□□□□ 0.27
PTPRK-208ENST00000392449 BAHCC1Q9P281 2608 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 TMEM191CA6NGB0 347 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 DDX3XO00571 662 aaKnown RBP eCLIP16.74■□□□□ 0.278e-10■□□□□ 11.1
PTPRK-208ENST00000392449 PRAMEF11O60813 436 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 FTLP02792 175 aaPredicted RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 TGM2P21980 687 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 MIPP30301 263 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 EIF4A3P38919 411 aaKnown RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 ABCG1P45844 678 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 PPP6R3Q5H9R7 873 aaPredicted RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 CAVIN1Q6NZI2 390 aaKnown RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 ZCCHC8Q6NZY4 707 aaKnown RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 RFX8Q6ZV50 586 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 ZSCAN30Q86W11 494 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 ARHGAP12Q8IWW6 846 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 VCPIP1Q96JH7 1222 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 DUSP23Q9BVJ7 150 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 CPEB1Q9BZB8 566 aaKnown RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 NAT10Q9H0A0 1025 aaKnown RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 CNOT8Q9UFF9 292 aaKnown RBP16.74■□□□□ 0.27
PTPRK-208ENST00000392449 MYO6Q9UM54 1294 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 RAI2Q9Y5P3 530 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 LRP4O75096 1905 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 RP1P56715 2156 aa16.74■□□□□ 0.27
PTPRK-208ENST00000392449 DFFAO00273 331 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 CSO75390 466 aaKnown RBP16.73■□□□□ 0.27
PTPRK-208ENST00000392449 C6P13671 934 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 TCF4P15884 667 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 ERCC2P18074 760 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 XPAP23025 273 aaPredicted RBP16.73■□□□□ 0.27
PTPRK-208ENST00000392449 NDST2P52849 883 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 ADKP55263 362 aaKnown RBP16.73■□□□□ 0.27
PTPRK-208ENST00000392449 UGP2Q16851 508 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 WSCD2Q2TBF2 565 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 TMEM52BQ4KMG9 183 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 PERM1Q5SV97 790 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 ERMARDQ5T6L9 678 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 KCTD16Q68DU8 428 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 EFL1Q7Z2Z2 1120 aaKnown RBP16.73■□□□□ 0.27
PTPRK-208ENST00000392449 MAPK15Q8TD08 544 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 ZNF653Q96CK0 615 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 NSMCE3Q96MG7 304 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 BPIFA3Q9BQP9 254 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 CLPBQ9H078 707 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 ABCG4Q9H172 646 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 SUV39H2Q9H5I1 410 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 MYO1AQ9UBC5 1043 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 CSNK1G3Q9Y6M4 447 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 TSPAN11A1L157 253 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 TTC24A2A3L6 582 aaPredicted RBP16.73■□□□□ 0.27
PTPRK-208ENST00000392449 MUSKO15146 869 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 DESP17661 470 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 CCDC173Q0VFZ6 552 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 FAXCQ5TGI0 409 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 AFMIDQ63HM1 303 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 MACC1Q6ZN28 852 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 SLC35F3Q8IY50 421 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 CACTIN-AS1Q8N1I8 211 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 TSACCQ96A04 125 aaPredicted RBP16.73■□□□□ 0.27
PTPRK-208ENST00000392449 NAF1Q96HR8 494 aaKnown RBP16.73■□□□□ 0.27
PTPRK-208ENST00000392449 IL12RB2Q99665 862 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 AIPL1Q9NZN9 384 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 SPASTQ9UBP0 616 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 OR1A2Q9Y585 309 aa16.73■□□□□ 0.27
PTPRK-208ENST00000392449 A0A1B0GTH6 734 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 PMS2P1A4D2B8 440 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 ARHGAP42A6NI28 874 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 DAPK3O43293 454 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 USP12O75317 370 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 LRCH4O75427 683 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 PALMO75781 387 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 PCCBP05166 539 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 GP1BAP07359 652 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 TSHRP16473 764 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 IL1R2P27930 398 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 MMP12P39900 470 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 ZNF165P49910 485 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 LIG3P49916 1009 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 KLHL30Q0D2K2 578 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 PTK2BQ14289 1009 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 LRRC14Q15048 493 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 SMTNL2Q2TAL5 461 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 TBC1D25Q3MII6 688 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 SNIP1Q8TAD8 396 aaKnown RBP16.72■□□□□ 0.27
PTPRK-208ENST00000392449 DEPDC7Q96QD5 511 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 C1QTNF7Q9BXJ2 289 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 SLC13A1Q9BZW2 595 aa16.72■□□□□ 0.27
PTPRK-208ENST00000392449 CWC15Q9P013 229 aaKnown RBP16.72■□□□□ 0.27
PTPRK-208ENST00000392449 PTPRQQ9UMZ3 2332 aa16.71■□□□□ 0.27
PTPRK-208ENST00000392449 A0A1W2PNU3 283 aaPredicted RBP16.71■□□□□ 0.27
PTPRK-208ENST00000392449 SMTNL1A8MU46 457 aa16.71■□□□□ 0.27
PTPRK-208ENST00000392449 A8MX80 341 aa16.71■□□□□ 0.27
PTPRK-208ENST00000392449 RIOK3O14730 519 aaKnown RBP16.71■□□□□ 0.27
PTPRK-208ENST00000392449 YY2O15391 372 aa16.71■□□□□ 0.27
PTPRK-208ENST00000392449 PRPSAP2O60256 369 aa16.71■□□□□ 0.27
PTPRK-208ENST00000392449 RNF8O76064 485 aa16.71■□□□□ 0.27
PTPRK-208ENST00000392449 HTR7P34969 479 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms