RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CDH7Q9ULB5 785 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 TDRKHQ9Y2W6 561 aaKnown RBP10.4□□□□□ -0.75
COL6A3-205ENST00000392004 RAI2Q9Y5P3 530 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 NUMBLQ9Y6R0 609 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 A0A0A0MRY4 1105 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 LIASO43766 372 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 TULP3O75386 442 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 WFS1O76024 890 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 TMCC1O94876 653 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 GUCA1CO95843 209 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 ALPIP09923 528 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 CTSEP14091 401 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 GPR1P46091 355 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 DHPSP49366 369 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 CDH4P55283 916 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 SZRD1Q7Z422 152 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 EGFL6Q8IUX8 553 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 SPATA6LQ8N4H0 392 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 RTL3Q8N8U3 475 aaKnown RBP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 CKAP2Q8WWK9 683 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 SPATA13Q96N96 652 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 SMOC2Q9H3U7 446 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 MRPS17Q9Y2R5 130 aaKnown RBP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 EME2A4GXA9 379 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 ITGALP20701 1170 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 CDK18Q07002 472 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 DLX2Q07687 328 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 C11orf91Q3C1V1 193 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 C2orf73Q8N5S3 287 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 TXNDC5Q8NBS9 432 aaKnown RBP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 PLD4Q96BZ4 506 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 ULK4Q96C45 1275 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 EPB41L4BQ9H329 900 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 ETAA1Q9NY74 926 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 GPSM3Q9Y4H4 160 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 NME7Q9Y5B8 376 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 H0Y3Z8 333 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 AHCYL1O43865 530 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 HNRNPA1P09651 372 aaKnown RBP eCLIP10.39□□□□□ -0.75
COL6A3-205ENST00000392004 FMO4P31512 558 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 GRIA1P42261 906 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 NR2C2P49116 596 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 CTBP1Q13363 440 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 RUNX3Q13761 415 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 GALNTL6Q49A17 601 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 PARM1Q6UWI2 310 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 TRIM67Q6ZTA4 783 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 C11orf96Q7Z7L8 435 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 APCDD1Q8J025 514 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 SIX5Q8N196 739 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 FITM2Q8N6M3 262 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 LRRC37BQ96QE4 947 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 CYTH2Q99418 400 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 CLPBQ9H078 707 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 GRHL1Q9NZI5 618 aa10.39□□□□□ -0.75
COL6A3-205ENST00000392004 ERI2A8K979 691 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 OPHN1O60890 802 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 KAT7O95251 611 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 STAU1O95793 577 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 CD70P32970 193 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 FDFT1P37268 417 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 POLR2LP62875 67 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 CDH17Q12864 832 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 INSCQ1MX18 579 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 KLC3Q6P597 504 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 STRA8Q7Z7C7 330 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 LINC00523Q86TU6 105 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 APLFQ8IW19 511 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PNPLA1Q8N8W4 532 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 USP13Q92995 863 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 NDNQ99608 321 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 P2RY13Q9BPV8 354 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 TBL1YQ9BQ87 522 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 TRIM56Q9BRZ2 755 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 CDC42EP4Q9H3Q1 356 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 UBE2ZQ9H832 354 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PRDM6Q9NQX0 595 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 GULP1Q9UBP9 304 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 MARCOQ9UEW3 520 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PCYOX1Q9UHG3 505 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 IQANK1A0A1B0GTG1 560 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 KLF8O95600 359 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 CRTAMO95727 393 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 HOXB8P17481 243 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 CALB2P22676 271 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 MAP4P27816 1152 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SKIV2L2P42285 1042 aaKnown RBP10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SLC6A11P48066 632 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 ARL4DP49703 201 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PLK1P53350 603 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 KLC1Q07866 573 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 SLC5A9Q2M3M2 681 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 PIK3R6Q5UE93 754 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 DCAF12L1Q5VU92 463 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 USP45Q70EL2 814 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 FNIP1Q8TF40 1166 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 TEKT4Q8WW24 435 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 HDAC10Q969S8 669 aa10.38□□□□□ -0.75
COL6A3-205ENST00000392004 MAGEB18Q96M61 343 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms