RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 OBP2AQ9NY56 170 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 MYO7AQ13402 2215 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 SNAP91O60641 907 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 PAPSS2O95340 614 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 ADH1CP00326 375 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 DHRS4L1P0CG22 281 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 TROVE2P10155 538 aaKnown RBP eCLIP18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 SCNN1BP51168 640 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 NEK3P51956 506 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 ILF2Q12905 390 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 POU6F1Q14863 301 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 TRMT10BQ6PF06 316 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 PARP9Q8IXQ6 854 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 SLC25A41Q8N5S1 370 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 SMARCD2Q92925 531 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 E2F7Q96AV8 911 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 CPNE1Q99829 537 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 CHRAC1Q9NRG0 131 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 C20orf96Q9NUD7 363 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 ABCB8Q9NUT2 735 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 THG1LQ9NWX6 298 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 SLC25A13Q9UJS0 675 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 CEP290O15078 2479 aa18.35■□□□□ 0.53
CCDC88C-203ENST00000389856 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 NEDD8-MDP1E9PL57 170 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 MGRN1O60291 552 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 C1QAP02745 245 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 CR2P20023 1033 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 SEPT6Q14141 434 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 SNCBQ16143 134 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 UGP2Q16851 508 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 SIRPB2Q5JXA9 342 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 KCNMB4Q86W47 210 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 TCP10LQ8TDR4 215 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 ZSWIM3Q96MP5 696 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 ECT2Q9H8V3 914 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 DUS2Q9NX74 493 aaKnown RBP18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 PLK2Q9NYY3 685 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 LMCD1Q9NZU5 365 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 DOCK6Q96HP0 2047 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 KLF11O14901 512 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 MUSKO15146 869 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 TGDSO95455 350 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 GP5P40197 560 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 CCNFP41002 786 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 CSNK1DP48730 415 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 NCALDP61601 193 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 DBN1Q16643 649 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 PITRM1Q5JRX3 1037 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 GRTP1Q5TC63 336 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 KIAA0930Q6ICG6 404 aaPredicted RBP18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 ANKRD54Q6NXT1 300 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 LINGO4Q6UY18 593 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 SH2D5Q6ZV89 423 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 KDELC2Q7Z4H8 507 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 TMEM25Q86YD3 366 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 NPAS3Q8IXF0 933 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 WFDC5Q8TCV5 224 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 CALML6Q8TD86 181 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 OSCP1Q8WVF1 389 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 NOD2Q9HC29 1040 aa18.34■□□□□ 0.53
CCDC88C-203ENST00000389856 ZCWPW2A0A1B0GU75 182 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 EPOPA6NHQ4 379 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 CHUKO15111 745 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 HNRNPCL1O60812 293 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 NFATC1O95644 943 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 IGSF6O95976 241 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 TYRP14679 529 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 CD70P32970 193 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 THOC5Q13769 683 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 CBX2Q14781 532 aaPredicted RBP18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 CES5AQ6NT32 575 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 TIFABQ6ZNK6 161 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 FAM47EQ6ZV65 393 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 APCDD1Q8J025 514 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 FITM2Q8N6M3 262 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 BPIFB1Q8TDL5 484 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 SRPK1Q96SB4 655 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 FAM167BQ9BTA0 163 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 TDRD1Q9BXT4 1180 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 CEP44Q9C0F1 390 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 IQCGQ9H095 443 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 LHX3Q9UBR4 397 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 RIMKLBQ9ULI2 386 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 GRID1Q9ULK0 1009 aa18.33■□□□□ 0.52
CCDC88C-203ENST00000389856 CXorf49A8MYA2 514 aaPredicted RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 CRTAMO95727 393 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 ATXN1LP0C7T5 689 aaKnown RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 PABPC1P11940 636 aaKnown RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 SPRP35270 261 aaPredicted RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 HADHAP40939 763 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 ETV4P43268 484 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 RGS19P49795 217 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 CSE1LP55060 971 aaKnown RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 ELF3P78545 371 aaPredicted RBP18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 PDE1BQ01064 536 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 ATAT1Q5SQI0 421 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 LY6G5CQ5SRR4 150 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 LMNTD2Q8IXW0 634 aa18.32■□□□□ 0.52
CCDC88C-203ENST00000389856 ADGRG2Q8IZP9 1017 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms