RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 CRAMP1Q96RY5 1269 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 RIT2Q99578 217 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 CDH7Q9ULB5 785 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 RAB23Q9ULC3 237 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 CNTNAP4Q9C0A0 1308 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 A8MUA0 341 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 CD53P19397 219 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 C19orf57Q0VDD7 668 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 BST2Q10589 180 aaKnown RBP11.85□□□□□ -0.51
NPHP4-202ENST00000378161 IKBKEQ14164 716 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 SSX2Q16385 188 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 SEL1L3Q68CR1 1132 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 CHSY1Q86X52 802 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 TDRPQ86YL5 185 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 RCOR2Q8IZ40 523 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 OFCC1Q8IZS5 231 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 C7orf43Q8WVR3 580 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 RNF34Q969K3 372 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 EXOSC4Q9NPD3 245 aaKnown RBP11.85□□□□□ -0.51
NPHP4-202ENST00000378161 CD320Q9NPF0 282 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 ITM2CQ9NQX7 267 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 USE1Q9NZ43 259 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.85□□□□□ -0.51
NPHP4-202ENST00000378161 IPO11Q9UI26 975 aaKnown RBP11.85□□□□□ -0.51
NPHP4-202ENST00000378161 PRR12Q9ULL5 1215 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 FGRP09769 529 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 YWHAHQ04917 246 aaPredicted RBP11.85□□□□□ -0.51
NPHP4-202ENST00000378161 GK3PQ14409 553 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 DMC1Q14565 340 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 FAM209BQ5JX69 171 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 ATAD3CQ5T2N8 411 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 C11orf63Q6NUN7 778 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 CDC42EP5Q6NZY7 148 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 BEND4Q6ZU67 534 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 IFNEQ86WN2 208 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 LDHDQ86WU2 507 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 CBR4Q8N4T8 237 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 C4orf32Q8N8J7 132 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 PIK3C3Q8NEB9 887 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 ACDQ96AP0 544 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 RACGAP1Q9H0H5 632 aa11.85□□□□□ -0.51
NPHP4-202ENST00000378161 XRN1Q8IZH2 1706 aaKnown RBP11.85□□□□□ -0.51
NPHP4-202ENST00000378161 ALDH4A1P30038 563 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 YWHABP31946 246 aaKnown RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SLC1A6P48664 564 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 ERVK-21P61565 698 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 DESI1Q6ICB0 168 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 ZCCHC23Q6ZST2 131 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 GALNT13Q8IUC8 556 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SMG8Q8ND04 991 aaKnown RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SLC35C1Q96A29 364 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 HSFY1Q96LI6 401 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 CINPQ9BW66 212 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 ZNF341Q9BYN7 854 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 TAS2R9Q9NYW1 312 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 PNMA8BQ9ULN7 279 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 MAPRE3Q9UPY8 281 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 GRIP1Q9Y3R0 1128 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 MST1RQ04912 1400 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 KDM4FA0A1W2PPD8 638 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 RGSL1A5PLK6 1076 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 ACOX3O15254 700 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 NUPL2O15504 423 aaKnown RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SCO2O43819 266 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 LDLRP01130 860 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 RAB3AP20336 220 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 GLDCP23378 1020 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 PIK3R1P27986 724 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 HSD17B2P37059 387 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 METTL11BQ5VVY1 283 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 OR6B2Q6IFH4 312 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 PRR5LQ6MZQ0 368 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 P2RY8Q86VZ1 359 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 LRRC17Q8N6Y2 441 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 GINS4Q9BRT9 223 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 B3GNT4Q9C0J1 378 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 TMEM8AQ9HCN3 771 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 DYRK4Q9NR20 520 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 IFT80Q9P2H3 777 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 ZC3H7BQ9UGR2 993 aaKnown RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 CDYLQ9Y232 598 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SLC27A5Q9Y2P5 690 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 BCL9O00512 1426 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 CSDE1O75534 798 aaKnown RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 PLATP00750 562 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SREBF1P36956 1147 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 TALDO1P37837 337 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 POLR2GP62487 172 aaKnown RBP eCLIP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SPATS1Q496A3 300 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 TTC23Q5W5X9 447 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 MAMSTRQ6ZN01 415 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 LHFPL5Q8TAF8 219 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 PRR11Q96HE9 360 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-202ENST00000378161 ELMO2Q96JJ3 720 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 TEX12Q9BXU0 123 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 TMEM117Q9H0C3 514 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 IMPAD1Q9NX62 359 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 SLC9A2Q9UBY0 812 aa11.84□□□□□ -0.51
NPHP4-202ENST00000378161 KLQ9UEF7 1012 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms