RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MPP4Q96JB8 637 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 SPRY4Q9C004 299 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 LRRC4Q9HBW1 653 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 ATP8A2Q9NTI2 1148 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 GJD2Q9UKL4 321 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 DERAQ9Y315 318 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 RRP7AQ9Y3A4 280 aaKnown RBP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 SAA2-SAA4A0A096LPE2 208 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 PRAC2D3DTV9 90 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 CHL1O00533 1208 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 METTL18O95568 372 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 ADAP00813 363 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 CTPS1P17812 591 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 GJC1P36383 396 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 RPL3P39023 403 aaKnown RBP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 CCR5P51681 352 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 UBE3AQ05086 875 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 DLG1Q12959 904 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 LPIN1Q14693 890 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 OTUD3Q5T2D3 398 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 WBP2NLQ6ICG8 309 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 GHDCQ8N2G8 530 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 NAXEQ8NCW5 288 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 IL17FQ96PD4 163 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 SEC62Q99442 399 aaKnown RBP2.29□□□□□ -2.04
VPS13A-206ENST00000376646 NOD2Q9HC29 1040 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 NOX4Q9NPH5 578 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 DNAJC16Q9Y2G8 782 aa2.29□□□□□ -2.04
VPS13A-206ENST00000376646 IGLV5-37A0A075B6J1 123 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 A0A096LPK6 155 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 A0A0B4J293 547 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 hDV102S1A0JD36 115 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 TULP2O00295 520 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 CLGNO14967 610 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 HOXC11O43248 304 aaPredicted RBP2.28□□□□□ -2.04
VPS13A-206ENST00000376646 XBP1P17861 261 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 TNFAIP3P21580 790 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 CXCR3P49682 368 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 ARSFP54793 590 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 FAM27E3Q08E93 113 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 ARL16Q0P5N6 197 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 TBX2Q13207 712 aaPredicted RBP2.28□□□□□ -2.04
VPS13A-206ENST00000376646 INTS11Q5TA45 600 aaKnown RBP2.28□□□□□ -2.04
VPS13A-206ENST00000376646 LURAP1LQ8IV03 231 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 CCDC105Q8IYK2 499 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 HTRA1Q92743 480 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 STAMQ92783 540 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 MASTLQ96GX5 879 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 DUX5Q96PT3 197 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 TWNKQ96RR1 684 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 SLC32A1Q9H598 525 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 TMEM160Q9NX00 188 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 ZNF69Q9UC07 566 aa2.28□□□□□ -2.04
VPS13A-206ENST00000376646 ERVV-2B6SEH9 535 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 J3KRW8 73 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 SEPT4O43236 478 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 EPB41L2O43491 1005 aaKnown RBP2.28□□□□□ -2.05
VPS13A-206ENST00000376646 HBP1O60381 514 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 LMX1BO60663 402 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 VNN2O95498 520 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 F7P08709 466 aaPredicted RBP2.28□□□□□ -2.05
VPS13A-206ENST00000376646 ATP1A3P13637 1013 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 HNF1BP35680 557 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 GPR12P47775 334 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 BRWD1-AS2P59051 145 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 TLE2Q04725 743 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 CHRNDQ07001 517 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 TRPC3Q13507 836 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 CTXN3Q4LDR2 81 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 GSG1LQ6UXU4 331 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 RINLQ6ZS11 566 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 SMIM29Q86T20 159 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 PATL1Q86TB9 770 aaKnown RBP2.28□□□□□ -2.05
VPS13A-206ENST00000376646 CHD1LQ86WJ1 897 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 TMC8Q8IU68 726 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 RFLNBQ8N5W9 214 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 AADATQ8N5Z0 425 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 POC1AQ8NBT0 407 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 DNAAF1Q8NEP3 725 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 HVCN1Q96D96 273 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 PPM1MQ96MI6 270 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 REEP2Q9BRK0 252 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 WASH6PQ9NQA3 447 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 TMLHEQ9NVH6 421 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 OR6C3Q9NZP0 311 aa2.28□□□□□ -2.05
VPS13A-206ENST00000376646 A0A0U1RQJ8 604 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 PRR23AA6NEV1 266 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 A6NLC8 198 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 BMPR1BO00238 502 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 ATP2C2O75185 946 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 RGS11O94810 467 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 KDM4BO94953 1096 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 SERPINC1P01008 464 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 TFPIP10646 304 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 EDN2P20800 178 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 TTKP33981 857 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 ADORA2A-AS1P86434 159 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 ACSM2AQ08AH3 577 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 LMOD3Q0VAK6 560 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 DDX10Q13206 875 aaKnown RBP2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms