RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 WRAP53Q9BUR4 548 aaKnown RBP21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 NUP85Q9BW27 656 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 CINPQ9BW66 212 aaPredicted RBP21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 C1QTNF7Q9BXJ2 289 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 NLGN3Q9NZ94 848 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 IP6K2Q9UHH9 426 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 KLF15Q9UIH9 416 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 KNTC1P50748 2209 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 H3BM21 787 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 SCAMP1O15126 338 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 ALPPL2P10696 532 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 JUPP14923 745 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 AMPD1P23109 780 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 CASP14P31944 242 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 HNF1BP35680 557 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 CLDN6P56747 220 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 YPEL5P62699 121 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 NSUN2Q08J23 767 aaKnown RBP eCLIP21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 EIF2B5Q13144 721 aaKnown RBP21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 NFKBIBQ15653 356 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 SKOR2Q2VWA4 1001 aaPredicted RBP21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 TXNRD3NBQ6F5E7 133 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 TP53I13Q8NBR0 393 aaPredicted RBP21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 BTBD6Q96KE9 485 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 XPO4Q9C0E2 1151 aaKnown RBP21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 ATP13A3Q9H7F0 1226 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 PCDH12Q9NPG4 1184 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 MBNL1Q9NR56 388 aaKnown RBP21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 ANAPC7Q9UJX3 599 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 NENFQ9UMX5 172 aa21.9■■□□□ 1.1
CCDC28B-201ENST00000373602 TOR1BO14657 336 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 RIOK3O14730 519 aaKnown RBP21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 SERPINA4P29622 427 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 HNRNPH3P31942 346 aaKnown RBP21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 DAB2P98082 770 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 SLC25A11Q02978 314 aaKnown RBP21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 PTK2BQ14289 1009 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 CCDC122Q5T0U0 273 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 CFAP58Q5T655 872 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 HES3Q5TGS1 186 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 ZSWIM9Q86XI8 627 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 FAM181AQ8N9Y4 354 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 ZNF548Q8NEK5 533 aaPredicted RBP21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 RFFLQ8WZ73 363 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 ZNF599Q96NL3 588 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 CSPG4P5Q96PW8 444 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 PSKH2Q96QS6 385 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 DUSP23Q9BVJ7 150 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 ETNK2Q9NVF9 386 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.89■■□□□ 1.092e-7■■■□□ 19.1
CCDC28B-201ENST00000373602 CSNK1G3Q9Y6M4 447 aa21.89■■□□□ 1.09
CCDC28B-201ENST00000373602 K7ESM1 405 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 MUSKO15146 869 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 TPM3P06753 285 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 CKMT1AP12532 417 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 JUNDP17535 347 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 THOP1P52888 689 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 E2F1Q01094 437 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 TMCO4Q5TGY1 634 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 ERAP2Q6P179 960 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 TMCO3Q6UWJ1 677 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 CACTIN-AS1Q8N1I8 211 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 ECHDC3Q96DC8 303 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 APOLD1Q96LR9 279 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 PCDH18Q9HCL0 1135 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 SEPT3Q9UH03 358 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 ATP8A1Q9Y2Q0 1164 aa21.88■■□□□ 1.09
CCDC28B-201ENST00000373602 MYO1FO00160 1098 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 NEBLO76041 1014 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 C6P13671 934 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 MMP12P39900 470 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 RENBPP51606 427 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 AP1S1P61966 158 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 BCL2L1Q07817 233 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 CYP4F3Q08477 520 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 SLC10A7Q0GE19 358 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 LBRQ14739 615 aaKnown RBP21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 LRRC14Q15048 493 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 AGERQ15109 404 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 IRF4Q15306 451 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 USP29Q9HBJ7 922 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 COQ6Q9Y2Z9 468 aa21.87■■□□□ 1.09
CCDC28B-201ENST00000373602 LY6G6EA0A0G2JKS1 128 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 CFAP69A5D8W1 941 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 TRAFD1O14545 582 aaPredicted RBP21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 AQP9O43315 295 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 PEX11BO96011 259 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 EIF4A3P38919 411 aaKnown RBP21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 LIG3P49916 1009 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 SCNN1BP51168 640 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 INSM1Q01101 510 aaPredicted RBP21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 TARDBPQ13148 414 aaKnown RBP eCLIP21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 WSCD2Q2TBF2 565 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 MACC1Q6ZN28 852 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 FAM71BQ8TC56 605 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 BTN2A2Q8WVV5 523 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 NSMCE3Q96MG7 304 aa21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 PNMA8BQ9ULN7 279 aaPredicted RBP21.86■■□□□ 1.09
CCDC28B-201ENST00000373602 U3KQA8 63 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms