RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 PRKCIP41743 596 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 PLK1P53350 603 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 COPAP53621 1224 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 CDH8P55286 799 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 NUP107P57740 925 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 NAA20P61599 178 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 B2MP61769 119 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 CUL2Q13617 745 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 LLGL1Q15334 1064 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 TEAD2Q15562 447 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 TRMT5Q32P41 509 aaKnown RBP6.96□□□□□ -1.29
CSDE1-204ENST00000369530 NADK2Q4G0N4 442 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 C10orf76Q5T2E6 689 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 PKN3Q6P5Z2 889 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 H2AFVQ71UI9 128 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 RBM23Q86U06 439 aaKnown RBP6.96□□□□□ -1.29
CSDE1-204ENST00000369530 CADM3Q8N126 398 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 ATAD1Q8NBU5 361 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 FAM172AQ8WUF8 416 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 GRIP2Q9C0E4 1043 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 SELENONQ9NZV5 590 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 MBD1Q9UIS9 605 aaPredicted RBP6.96□□□□□ -1.29
CSDE1-204ENST00000369530 PRG3Q9Y2Y8 225 aaPredicted RBP6.96□□□□□ -1.29
CSDE1-204ENST00000369530 CELSR3Q9NYQ7 3312 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 CACNA1AO00555 2505 aa6.96□□□□□ -1.29
CSDE1-204ENST00000369530 UPK3BL1B0FP48 263 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 UPK3BL2E5RIL1 263 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 H3BNX3 289 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 SPINT1O43278 529 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PRDX6P30041 224 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 STX2P32856 288 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PHBP35232 272 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 ACTR3P61158 418 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 CDR2Q01850 454 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 GALNT1Q10472 559 aaPredicted RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 DUSP4Q13115 394 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PDAP1Q13442 181 aaKnown RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 KAZNQ674X7 775 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 KRT39Q6A163 491 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 METTL3Q86U44 580 aaKnown RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 HACE1Q8IYU2 909 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 FBXL6Q8N531 539 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 C12orf29Q8N999 325 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 ANKRD52Q8NB46 1076 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 ERP27Q96DN0 273 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 MCRS1Q96EZ8 462 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 RANBP9Q96S59 729 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 SELENOSQ9BQE4 189 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PACSIN1Q9BY11 444 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 INTS2Q9H0H0 1204 aaKnown RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 EBF3Q9H4W6 596 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PARP2Q9UGN5 583 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PCDHB4Q9Y5E5 795 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PGRMC1O00264 195 aaKnown RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 KCNK3O14649 394 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 SCO2O43819 266 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 CACNG3O60359 315 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 APOEP02649 317 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 ANXA13P27216 316 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 NDST1P52848 882 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 RING1Q06587 406 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 DHX34Q14147 1143 aaKnown RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 CDONQ4KMG0 1287 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 ADAT2Q7Z6V5 191 aaKnown RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 CCDC117Q8IWD4 279 aaPredicted RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 SPARTQ8N0X7 666 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 LILRB1Q8NHL6 650 aaPredicted RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 DENND1AQ8TEH3 1009 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 DOK1Q99704 481 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 NIF3L1Q9GZT8 377 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 CHORDC1Q9UHD1 332 aaPredicted RBP6.96□□□□□ -1.3
CSDE1-204ENST00000369530 PLA2G4CQ9UP65 541 aa6.96□□□□□ -1.3
CSDE1-204ENST00000369530 DRGXA6NNA5 263 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 RNF103O00237 685 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 DAPK3O43293 454 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 PALMO75781 387 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 GAS8O95995 478 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 HOXB1P14653 301 aaPredicted RBP6.95□□□□□ -1.3
CSDE1-204ENST00000369530 MED21Q13503 144 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 SLC39A12Q504Y0 691 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 RHBDF2Q6PJF5 856 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 PPP1R21Q6ZMI0 780 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 MTSS1LQ765P7 747 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 OTOP3Q7RTS5 596 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 KLHL7Q8IXQ5 586 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 TDRD5Q8NAT2 981 aaKnown RBP6.95□□□□□ -1.3
CSDE1-204ENST00000369530 INSM2Q96T92 566 aaPredicted RBP6.95□□□□□ -1.3
CSDE1-204ENST00000369530 GPATCH1Q9BRR8 931 aaKnown RBP6.95□□□□□ -1.3
CSDE1-204ENST00000369530 GRHL1Q9NZI5 618 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 PCDHGA11Q9Y5H2 935 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 A0A0A6YYK5 440 aaPredicted RBP6.95□□□□□ -1.3
CSDE1-204ENST00000369530 FADS2P1A8MWK0 482 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 H0Y3Z8 333 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 CCL16O15467 120 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 RIPK2O43353 540 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 ITM2AO43736 263 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 EDF1O60869 148 aaKnown RBP6.95□□□□□ -1.3
CSDE1-204ENST00000369530 ESRRBO95718 433 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 VCLP18206 1134 aa6.95□□□□□ -1.3
CSDE1-204ENST00000369530 CDH3P22223 829 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms