RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 NSMCE3Q96MG7 304 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 BPIFA3Q9BQP9 254 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SLC39A8Q9C0K1 460 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ANTXR1Q9H6X2 564 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 GDF3Q9NR23 364 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 DDX43Q9NXZ2 648 aaKnown RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ITGA11Q9UKX5 1188 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 BTBD3Q9Y2F9 522 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ANKRD6Q9Y2G4 727 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SNCAIPQ9Y6H5 919 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 PNPLA7Q6ZV29 1317 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 LOC100653049A0A140TA62 436 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 TPST1O60507 370 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 KRT34O76011 436 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SERPINF2P08697 491 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CD63P08962 238 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CYP2D6P10635 497 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ZNF23P17027 643 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SOAT1P35610 550 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ZNF132P52740 706 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 GALK2Q01415 458 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 EPS8Q12929 822 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 MPPE1Q53F39 396 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 HES5Q5TA89 166 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 UNC13DQ70J99 1090 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 LNX2Q8N448 690 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 RNF25Q96BH1 459 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 NDUFAF4Q9P032 175 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CIDEBQ9UHD4 219 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 GSAPA4D1B5 854 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 RIPK2O43353 540 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 OR10H2O60403 315 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 RAMP2O60895 175 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 NR3C1P04150 777 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 NFKB1P19838 968 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 S100A2P29034 98 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 CPA2P48052 419 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 FOXO4P98177 505 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 DEFA6Q01524 100 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 DGUOKQ16854 277 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 UGT3A2Q3SY77 523 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 PAGE2BQ5JRK9 111 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 RAET1GQ6H3X3 334 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 TRAPPC5Q8IUR0 188 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ZNF507Q8TCN5 953 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 HASPINQ8TF76 798 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 CPT1BQ92523 772 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 MTFMTQ96DP5 389 aaKnown RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 FAM124BQ9H5Z6 455 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 LDAHQ9H6V9 325 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 KIAA1522Q9P206 1035 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 EIF2B4Q9UI10 523 aaKnown RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 SNX12Q9UMY4 172 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ENTPD4Q9Y227 616 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 COQ6Q9Y2Z9 468 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 RAD54BQ9Y620 910 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 CYP2D7A0A087X1C5 515 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 A0A0D9SFI3 127 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 GRAP2O75791 330 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 INMTO95050 263 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 GJB6O95452 261 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 VTNP04004 478 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ARF3P61204 181 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ARF1P84077 181 aaKnown RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ROR1Q01973 937 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 MCL1Q07820 350 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 PWP1Q13610 501 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 HNRNPDQ14103 355 aaKnown RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 CERCAMQ5T4B2 595 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ARMC12Q5T9G4 340 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 B3GNT6Q6ZMB0 384 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 TPGS1Q6ZTW0 290 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 FRMD5Q7Z6J6 570 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 RHOT1Q8IXI2 618 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 RIBC1Q8N443 379 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 C3orf58Q8NDZ4 430 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 OR10G6Q8NH81 332 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ZNF564Q8TBZ8 553 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 USP7Q93009 1102 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 ARL5BQ96KC2 179 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 SFXN1Q9H9B4 322 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 PRMT8Q9NR22 394 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 PDGFCQ9NRA1 345 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 MCUBQ9NWR8 336 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 FADS3Q9Y5Q0 445 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 HIST1H2ABP04908 130 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 LGALS2P05162 132 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 CD40LGP29965 261 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 GCLMP48507 274 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 NRIP1P48552 1158 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 KCNK10P57789 538 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 C1DQ13901 141 aaKnown RBP8.69□□□□□ -1.02
SYNE1-206ENST00000367253 SLC39A12Q504Y0 691 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 TFDP3Q5H9I0 405 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 C6orf132Q5T0Z8 1188 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 HIST3H2AQ7L7L0 130 aa8.69□□□□□ -1.02
SYNE1-206ENST00000367253 C4orf33Q8N1A6 199 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms