RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CCRL2O00421 344 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 POLR1CO15160 346 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 BCAS1O75363 584 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TIPRLO75663 272 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ALDH1A2O94788 518 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 GABARAPO95166 117 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TRIM16O95361 564 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 GNAO1P09471 354 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 FAM86B2P0C5J1 330 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 KDELR1P24390 212 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MAGEA3P43357 314 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 RPS9P46781 194 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 PLA2G16P53816 162 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ATXN3P54252 364 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MLLT10P55197 1068 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 NIPAL4Q0D2K0 466 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SQLEQ14534 574 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 POU6F1Q14863 301 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 LDLRAP1Q5SW96 308 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 STEAP4Q687X5 459 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 PRR5LQ6MZQ0 368 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 CLYBLQ8N0X4 340 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SPARTQ8N0X7 666 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 FAM109AQ8N4B1 249 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TMEM35BQ8NCS4 154 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ZSWIM2Q8NEG5 633 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 BPIFB6Q8NFQ5 453 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 HDAC2Q92769 488 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 PEX13Q92968 403 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MUL1Q969V5 352 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ISL2Q96A47 359 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ROPN1LQ96C74 230 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MFSD14AQ96MC6 490 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TSNARE1Q96NA8 513 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 RDH12Q96NR8 316 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SLC25A23Q9BV35 468 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 LHPPQ9H008 270 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SDCBP2Q9H190 292 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 EPS8L2Q9H6S3 715 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 XPNPEP3Q9NQH7 507 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SMYD2Q9NRG4 433 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ANAPC2Q9UJX6 822 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 NUP50Q9UKX7 468 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 BAG5Q9UL15 447 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MINPP1Q9UNW1 487 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 PCDHAC2Q9Y5I4 1007 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TCAF2A6NFQ2 919 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 BBIP1A8MTZ0 92 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 DLGAP1O14490 977 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 CDK2AP1O14519 115 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MEIS2O14770 477 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ZW10O43264 779 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ENTPD3O75355 529 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ALDOAP04075 364 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TRAPPC2P0DI81 140 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TRAPPC2BP0DI82 140 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 PCNAP12004 261 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MLNP12872 115 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 EN2P19622 333 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TYK2P29597 1187 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MSX2P35548 267 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 EIF2DP41214 584 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ALDH7A1P49419 539 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 AP2S1P53680 142 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SLC25A11Q02978 314 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ZNF252P-AS1Q0IIN9 211 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 GALNT3Q14435 633 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 QRICH1Q2TAL8 776 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 C5orf22Q49AR2 442 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ZNF484Q5JVG2 852 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 NDUFAF5Q5TEU4 345 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 AGAP6Q5VW22 663 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TATDN1Q6P1N9 297 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 XKRXQ6PP77 449 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 OTOP1Q7RTM1 612 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ANKRD52Q8NB46 1076 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 DCAF4Q8WV16 495 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 GIMAP1Q8WWP7 306 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 JPH3Q8WXH2 748 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 FBXL18Q96ME1 805 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 AGAP4Q96P64 663 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ACO2Q99798 780 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 CLSTN3Q9BQT9 956 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 FUNDC2Q9BWH2 189 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 AMNQ9BXJ7 453 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 FTHL17Q9BXU8 183 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 DNAI2Q9GZS0 605 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 RNPEPQ9H4A4 650 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TM9SF3Q9HD45 589 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 DDX28Q9NUL7 540 aaKnown RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 TBC1D13Q9NVG8 400 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 PAK1IP1Q9NWT1 392 aaPredicted RBP8.19□□□□□ -1.1
ATG4A-201ENST00000343524 MOCS1Q9NZB8 636 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SEPT10Q9P0V9 454 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 CD300AQ9UGN4 299 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 ZBTB21Q9ULJ3 1066 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 SLC27A5Q9Y2P5 690 aa8.19□□□□□ -1.1
ATG4A-201ENST00000343524 COL6A3P12111 3177 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms