RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 SERPINB6P35237 376 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 UGP2Q16851 508 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 TMEM259Q4ZIN3 620 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 TSPAN33Q86UF1 283 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 PLPP6Q8IY26 295 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 TEX26Q8N6G2 289 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 MAML1Q92585 1016 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 BMFQ96LC9 184 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 KLF6Q99612 283 aaPredicted RBP12.15□□□□□ -0.46
SCFD1-201ENST00000311943 MAK16Q9BXY0 300 aaKnown RBP12.15□□□□□ -0.46
SCFD1-201ENST00000311943 SEPT3Q9UH03 358 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 ANKRD6Q9Y2G4 727 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 R3HDM2Q9Y2K5 976 aaKnown RBP12.15□□□□□ -0.46
SCFD1-201ENST00000311943 PCDHB9Q9Y5E1 797 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 BPTFQ12830 3046 aa12.15□□□□□ -0.46
SCFD1-201ENST00000311943 A0A1B0GTW7 788 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 USP27XA6NNY8 438 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 NEMP1O14524 444 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 ARHGAP6O43182 974 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 GM2AP17900 193 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 ZNF135P52742 658 aaPredicted RBP12.15□□□□□ -0.47
SCFD1-201ENST00000311943 RALGDSQ12967 914 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 OLIG2Q13516 323 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 NOMO1Q15155 1222 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 IFI16Q16666 785 aaKnown RBP12.15□□□□□ -0.47
SCFD1-201ENST00000311943 HLA-BQ31612 363 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 TFDP3Q5H9I0 405 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 DENND2CQ68D51 928 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 PEX26Q7Z412 305 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 HORMAD1Q86X24 394 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 GATAD2AQ86YP4 633 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 CCDC13Q8IYE1 715 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 SLC22A18ASQ8N1D0 253 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 OR13H1Q8NG92 308 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 HDAC11Q96DB2 347 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 NUSAP1Q9BXS6 441 aaKnown RBP12.15□□□□□ -0.47
SCFD1-201ENST00000311943 CPEB1Q9BZB8 566 aaKnown RBP12.15□□□□□ -0.47
SCFD1-201ENST00000311943 SCUBE2Q9NQ36 999 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 DDX56Q9NY93 547 aaKnown RBP12.15□□□□□ -0.47
SCFD1-201ENST00000311943 CHKBQ9Y259 395 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 BTBD3Q9Y2F9 522 aa12.15□□□□□ -0.47
SCFD1-201ENST00000311943 TP53BP1Q12888 1972 aaPredicted RBP12.15□□□□□ -0.47
SCFD1-201ENST00000311943 TM4SF5O14894 197 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 SDC3O75056 442 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 MT-CYBP00156 380 aaPredicted RBP12.14□□□□□ -0.47
SCFD1-201ENST00000311943 PRLP01236 227 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 LHCGRP22888 699 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 CD68P34810 354 aaPredicted RBP12.14□□□□□ -0.47
SCFD1-201ENST00000311943 BCL2L1Q07817 233 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 PPIDQ08752 370 aaKnown RBP12.14□□□□□ -0.47
SCFD1-201ENST00000311943 SHBQ15464 509 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 ODF2Q5BJF6 829 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 GCNT7Q6ZNI0 430 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 PRUNE1Q86TP1 453 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 TAB3Q8N5C8 712 aaPredicted RBP12.14□□□□□ -0.47
SCFD1-201ENST00000311943 CASKIN2Q8WXE0 1202 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 ECHDC3Q96DC8 303 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 RBM15Q96T37 977 aaKnown RBP eCLIP12.14□□□□□ -0.47
SCFD1-201ENST00000311943 SLC17A9Q9BYT1 436 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 GAREM1Q9H706 876 aa12.14□□□□□ -0.47
SCFD1-201ENST00000311943 TRMT1Q9NXH9 659 aaKnown RBP12.14□□□□□ -0.47
SCFD1-201ENST00000311943 RIOK3O14730 519 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 LRP3O75074 770 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PIRTP0C851 137 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CCNCP24863 283 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CTNNA2P26232 953 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 ID4P47928 161 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 LMNB2Q03252 620 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 NSUN2Q08J23 767 aaKnown RBP eCLIP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 WASHC5Q12768 1159 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 BNIP3Q12983 259 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 HNRNPDQ14103 355 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PRPF39Q86UA1 669 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 TRIM69Q86WT6 500 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 RCOR2Q8IZ40 523 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 TMEM145Q8NBT3 493 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PLA2G15Q8NCC3 412 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 EXD1Q8NHP7 514 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 ACTL9Q8TC94 416 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PPP1R16AQ96I34 528 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 TSGA13Q96PP4 275 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 NUDCD1Q96RS6 583 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 OSBPL8Q9BZF1 889 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 LUC7LQ9NQ29 371 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 DLL3Q9NYJ7 618 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PPP2R2CQ9Y2T4 447 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CNOT1A5YKK6 2376 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CELSR3Q9NYQ7 3312 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 NPIPB15A6NHN6 443 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 UPK3BL1B0FP48 263 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 UPK3BL2E5RIL1 263 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 K7ESM1 405 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 SLC7A4O43246 635 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 TOP3BO95985 862 aaKnown RBP12.13□□□□□ -0.47
SCFD1-201ENST00000311943 GNSP15586 552 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 PTPN3P26045 913 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 RBL1P28749 1068 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CD38P28907 300 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CXCR5P32302 372 aa12.13□□□□□ -0.47
SCFD1-201ENST00000311943 CD86P42081 329 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms