RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GRK3P35626 688 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 CENPAP49450 140 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 AQP4P55087 323 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ATP6V0D1P61421 351 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 CTBP1Q13363 440 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 QPRTQ15274 297 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 EIF3MQ7L2H7 374 aaKnown RBP12.93□□□□□ -0.34
COL3A1-201ENST00000304636 MRIQ9BWK5 157 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 RAPGEFL1Q9UHV5 662 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SNX6Q9UNH7 406 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 PAPSS1O43252 624 aaPredicted RBP12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SLC22A3O75751 556 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 CLTBP09497 229 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 CD86P42081 329 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ZCCHC8Q6NZY4 707 aaKnown RBP12.93□□□□□ -0.34
COL3A1-201ENST00000304636 HIPK1Q86Z02 1210 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SELENOMQ8WWX9 145 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 IKZF4Q9H2S9 585 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ZFYVE28Q9HCC9 887 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SPTLC1O15269 473 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 MATKP42679 507 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 AIF1P55008 147 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 EVX2Q03828 476 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 GRIK5Q16478 980 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 YAF2Q8IY57 180 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SPATA6LQ8N4H0 392 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 LRRN4Q8WUT4 740 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 C18orf25Q96B23 403 aaPredicted RBP12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SLC47A1Q96FL8 570 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF317Q96PQ6 595 aaPredicted RBP12.93□□□□□ -0.34
COL3A1-201ENST00000304636 TRNAU1APQ9NX07 287 aaKnown RBP12.93□□□□□ -0.34
COL3A1-201ENST00000304636 LINC00032P0C843 101 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ITGB5P18084 799 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 TSPAN8P19075 237 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 PBLDP30039 288 aaPredicted RBP12.93□□□□□ -0.34
COL3A1-201ENST00000304636 BNC1Q01954 994 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 PTPN20Q4JDL3 420 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 ZBTB46Q86UZ6 589 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 TMEM159Q96B96 161 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 SERAC1Q96JX3 654 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 CORO2BQ9UQ03 480 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 KCNH4Q9UQ05 1017 aa12.93□□□□□ -0.34
COL3A1-201ENST00000304636 WTIPA6NIX2 430 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ITGA2P17301 1181 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 CCT3P49368 545 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 CDK9P50750 372 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 RAB27AP51159 221 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 CRY1Q16526 586 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 AFTPHQ6ULP2 937 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 SPATA19Q7Z5L4 167 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 SAPCD2Q86UD0 394 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 UCMAQ8WVF2 138 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 LPGAT1Q92604 370 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 LENG9Q96B70 501 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 CDT1Q9H211 546 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ARL15Q9NXU5 204 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 FAM198AQ9UFP1 575 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 PRKAG3Q9UGI9 489 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 TSPAN3O60637 253 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 STX11O75558 287 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ZNF12P17014 697 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ERCC2P18074 760 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 UBA1P22314 1058 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 WARSP23381 471 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ALDH7A1P49419 539 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 DACT2Q5SW24 774 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ANKRD22Q5VYY1 191 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 CRTC3Q6UUV7 619 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 THAP5Q7Z6K1 395 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 PIGZQ86VD9 579 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 MYLPFQ96A32 169 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 UNC93B1Q9H1C4 597 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 KLHL1Q9NR64 748 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 MRPL39Q9NYK5 338 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 NOCTQ9UK39 431 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 AREL1O15033 823 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ULK1O75385 1050 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ANXA5P08758 320 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 SNHG28P0DPA3 235 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 DPEP1P16444 411 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 CAPZA2P47755 286 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ALDH9A1P49189 494 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ACTR3P61158 418 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 STARD3Q14849 445 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 SDE2Q6IQ49 451 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 XYLT1Q86Y38 959 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 C10orf53Q8N6V4 93 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 MCFD2Q8NI22 146 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 LENG8Q96PV6 779 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 SMPD3Q9NY59 655 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ERGIC3Q9Y282 383 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 WBP11Q9Y2W2 641 aaKnown RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 ZBTB14O43829 449 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 UGT2B11O75310 529 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 UPP2O95045 317 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 GRK4P32298 578 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 TTPAP49638 278 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 RAB15P59190 212 aa12.92□□□□□ -0.34
COL3A1-201ENST00000304636 NBPF12Q5TAG4 269 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-201ENST00000304636 FKBP1CQ5VVH2 108 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms