RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ZNF224Q9NZL3 707 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 RSL24D1Q9UHA3 163 aaKnown RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 SYNPO2Q9UMS6 1093 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 CAPN6Q9Y6Q1 641 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 AMHP03971 560 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 RPL38P63173 70 aaKnown RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 MEA1Q16626 185 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 Q4G0T1 1027 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 XKR6Q5GH73 641 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 CLHC1Q8NHS4 586 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 SETD6Q8TBK2 473 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 IGDCC4Q8TDY8 1250 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 ABCG4Q9H172 646 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 SAR1AQ9NR31 198 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 DKK3Q9UBP4 350 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 PRKAB1Q9Y478 270 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 ADGRB2O60241 1585 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 NEURL4Q96JN8 1562 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 FAM86C2PA6NEL3 165 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 PDE2AO00408 941 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 XKRYO14609 159 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 ULK1O75385 1050 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 SNRPB2P08579 225 aaKnown RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 ALADP13716 330 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 PRLRP16471 622 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 HTR1BP28222 390 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 CASP5P51878 434 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 NDST1P52848 882 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 C1QBPQ07021 282 aaKnown RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 EFR3AQ14156 821 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 LSM12Q3MHD2 195 aaKnown RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 RABL6Q3YEC7 729 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 TRIM40Q6P9F5 258 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 PTGR2Q8N8N7 351 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 OR2L3Q8NG85 312 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 OR10G6Q8NH81 332 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 SLC5A5Q92911 643 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 TDRD1Q9BXT4 1180 aaKnown RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 SLC39A8Q9C0K1 460 aa10.45□□□□□ -0.74
CLIP1-201ENST00000302528 MRPS33Q9Y291 106 aaKnown RBP10.45□□□□□ -0.74
CLIP1-201ENST00000302528 SLC28A1O00337 649 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 GSTT1P30711 240 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 TUFMP49411 452 aaKnown RBP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 EN1Q05925 392 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 MBTD1Q05BQ5 628 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 GPR107Q5VW38 600 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 POMZP3Q6PJE2 187 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PLET1Q6UQ28 207 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 C3orf67Q6ZVT6 689 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 ABRAQ8N0Z2 381 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 NKX2-3Q8TAU0 364 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 C1GALT1C1Q96EU7 318 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 CRAMP1Q96RY5 1269 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 CCNB1IP1Q9NPC3 277 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 FAM240BA0A1B0GVZ2 78 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 RGSL1A5PLK6 1076 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 TTC34A8MYJ7 566 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 MLYCDO95822 493 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 NOS2P35228 1153 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 MTTPP55157 894 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 SLC34A3Q8N130 599 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 TNFAIP8L1Q8WVP5 186 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PIK3R3Q92569 461 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 VAT1Q99536 393 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 XPNPEP3Q9NQH7 507 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 KCNK4Q9NYG8 393 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 C1QTNF3-AMACRE9PGA6 284 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 TPP1O14773 563 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PQBP1O60828 265 aaKnown RBP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PECAM1P16284 738 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 GALK1P51570 392 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 ERVK-24P63145 666 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PCDH1Q08174 1060 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 TSGA10IPQ3SY00 556 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 NEPROQ6NW34 567 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 RAB11FIP2Q7L804 512 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 EIF1ADQ8N9N8 165 aaKnown RBP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 FCRL4Q96PJ5 515 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PANX1Q96RD7 426 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 ELOVL4Q9GZR5 314 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PLEKHA1Q9HB21 404 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 SPAG4Q9NPE6 437 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 DUSP10Q9Y6W6 482 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 MYOM1P52179 1685 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 USP32Q8NFA0 1604 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 GJA1P17302 382 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 SNRPD1P62314 119 aaKnown RBP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 MPPE1Q53F39 396 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 CHRDL2Q6WN34 429 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 TMPRSS11AQ6ZMR5 421 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 BEND5Q7L4P6 421 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 PPP1R13LQ8WUF5 828 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 C2orf49Q9BVC5 232 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-201ENST00000302528 MARCH7Q9H992 704 aa10.44□□□□□ -0.74
CLIP1-201ENST00000302528 TP73O15350 636 aa10.43□□□□□ -0.74
CLIP1-201ENST00000302528 CDH3P22223 829 aa10.43□□□□□ -0.74
CLIP1-201ENST00000302528 NR1H2P55055 460 aa10.43□□□□□ -0.74
CLIP1-201ENST00000302528 CASP9P55211 416 aa10.43□□□□□ -0.74
CLIP1-201ENST00000302528 SLC39A12Q504Y0 691 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms